RNA id: XM_034300315.1


Basic Information

Item Value
RNA id XM_034300315.1
length 1596
RNA type mRNA
GC content 0.38
exon number 8
gene id LOC113525654
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17215246 ~ 17222564 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCACAGATCATTGCACAACGACAGGAAGGTGTTTACGTAAGGCCTGGGGCTCAATCTTTCACACTTCCTGTGTGGTATGCAGTTTTTTTCTCACATCGGCTCAAAAGTGGAAGTGGACACGACATCGAGACACTGCACAGCGACAAAGACAGTGTGTAAGATAACtaacaactttttaaaattagttttattttctgaagtggCATTTGAGAGTTTGGACGTAGAATGATGATCCTCCTCATCTTCACCTTCTGCCTGATTATAGCTGATACTGATGCTGTAACTACAGTAACTGGATACAGAGGAAGATCAGTTCAGATTAAATGCCCCTACGAATCTGGatatgaagaatacaaaaaGTACCTCTGCAGAGGTGAATGTTCCATTTGGTATGGAACCACAGACATTCCTGTTGAATctggatctgctgctaaagacACCAGATTCTCTCTGTATGACGACACAACAGCCAAAGTCTTCACCGTCACCATCACTGATCTGAGACCAGAGGATAAAGGCACTTACTGGTGTGCGATAGAGCGGACAGGGCtggatatttacacacagattcTACTGCTGGTGAAAACGGAAGAGCCTTCCATCAGTACTGTCTCAcagtccacacacaccacacactccgCTTCAACACATATCGTGAGTCCATCAGTGCATGCTGAGACCACACATTCAACAACTAATCCATTAAATAGTGATCTCCAAACCATCGCTCTCTCACCCCATGTTATTCCAGGAATAGCTATCTACATCATGATCAGTACAGGTGCAGTGTTGTTAACTGGTGGTGTGATTATAGCAATCTACTGCAACATAAATCGTCAAGGCTCTGAAACAGTGACACAATCTTCCAGAGAGCCAAATGGAGATtatgaaaatgaccaaaatttACTTCCTCTtcaagcaaaagaaaaagccaCTTTACCTGAATCTGTCTATCAGAGTCTGACCTTTACTaataaccaatcagactcagTCTACCAGAGTCTGACCTTTACTaataaccaatcagactcagTCTATCAGAGTCTGACCTGCACTaataaccaatcagactcagTCTATCAGAGTCTGACCTGCACTAATAACCAGTAAGAATCAGGACACCACTGTTCACCATCCAAGTGGACTAGGTTTAATGGTCACAGTGATTATTgtttccccattttttttttttttttttttgcttttgaacTGTTTCAAAATGAACCTCTATTCCTTTCTTCAACTtgcagtcatcatcatcaccatcatcatcatcatcatcaatttTTCCCACACTAGCCATACATGTAATGATGCTGcacataaaatcattttttcactgAACAACTTATCATTTGGTGTTTATCAAAAatctttgttatttatttatttttcatttatcatgTCTTCCACTTTTACAGTTAGCTtattaataagcaaataaaaaaaacccaaaatacaTGTAAGATATACACTTCATATATTTAACTCCAATGTCATTGTAACTAAGATTAAATAAGATTATGAATTCATCTTGTGTACCCATGActctaatttcattttcatgaataaaGCAGGAATTTGTCTTGAATTTC

Function

GO: NA

KEGG:

id description
K20395 CD300B_D_F; CO300B/D/F antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577336.1 lncRNA downstream 137085 17068536 ~ 17078161 (-) True LOC117596165
TU447211 lncRNA downstream 162981 17032903 ~ 17052265 (-) True G377474
TU447172 lncRNA downstream 219597 16995398 ~ 16995649 (-) True G377441
TU447151 lncRNA downstream 356537 16856779 ~ 16858709 (-) True G377422
TU447085 lncRNA downstream 528762 16645096 ~ 16686484 (-) False slc25a10
TU447707 lncRNA upstream 19271 17241835 ~ 17253715 (-) True G377847
TU447754 lncRNA upstream 93987 17316551 ~ 17316980 (-) True G377874
TU447757 lncRNA upstream 98087 17320651 ~ 17337648 (-) True G377877
TU447766 lncRNA upstream 115723 17338287 ~ 17338671 (-) False LOC113526761
TU447776 lncRNA upstream 158617 17381181 ~ 17381602 (-) True G377892
XM_034300312.1 mRNA downstream 1493 17186588 ~ 17213753 (-) False LOC113525651
XM_034300313.1 mRNA downstream 1493 17206715 ~ 17213753 (-) False LOC113525651
XM_034300310.1 mRNA downstream 11674 17186588 ~ 17203572 (-) True LOC113525651
XM_034300311.1 mRNA downstream 11674 17186588 ~ 17203572 (-) False LOC113525651
XM_034300314.1 mRNA downstream 11674 17197245 ~ 17203572 (-) False LOC113525651
XM_026914396.2 mRNA upstream 51878 17274442 ~ 17279093 (-) True nxnl1
XM_026914397.2 mRNA upstream 51878 17274442 ~ 17275757 (-) False nxnl1
XM_026914469.2 mRNA upstream 59000 17281564 ~ 17298227 (-) True colgalt1b
XM_034300112.1 mRNA upstream 59000 17281564 ~ 17298226 (-) False colgalt1b
XM_034300125.1 mRNA upstream 95138 17317702 ~ 17322146 (-) True LOC117596143
TU447682 other downstream 20254 17182732 ~ 17194992 (-) False LOC113525650
TU447143 other downstream 363583 16845012 ~ 16851663 (-) True G377416
TU447144 other downstream 369644 16845012 ~ 16845602 (-) False G377416
XR_004577334.1 other downstream 739815 16425454 ~ 16475431 (-) False LOC113537389
TU446672 other downstream 1050876 16155608 ~ 16164370 (-) False zgc:158803
TU447735 other upstream 43665 17266229 ~ 17268030 (-) True G377862
TU447860 other upstream 485436 17708000 ~ 17712592 (-) False ubl5
TU447895 other upstream 580696 17803260 ~ 17814445 (-) True G377994
XR_004577358.1 other upstream 940982 18163546 ~ 18166960 (-) False LOC113524896
TU448228 other upstream 1140879 18363443 ~ 18365921 (-) False gpank1

Expression Profile