RNA id: XM_034300341.1


Basic Information

Item Value
RNA id XM_034300341.1
length 2634
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC113537739
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6468517 ~ 6500613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCCTCGGTATGCCCTACTTAGTGCGCTATGGGAGCAATTAGGGAGCCGTTCGGGATTCGGCTTGAGCGCGCTTTAAAACACATACAGGCGGAATGACGTGAAGTCAGGTGGAGAGAAAATCGCCTTTAGACCGAGGGAGCGGCGTCGCGGAGGCTCGCGCTAATGAAGTAATCCGTTTTAAAACGGAAACAGCATCGAAAATGACATTAGAATTGTCATTTACTAGATCAGAGCGCGCGCGACAGTCAGTAGATAATGTCTgaggtgtgttttctttttctccctatAGTGCTTGACATGACCGAGGAGCGTCTTTTTGGATAAATGAAGACGTTTTGTGGGTTTTGGATGAGGTGAATAAGGCTTTTGGAGGCTCACATTCTGACAGtaCTTACTGGTGTTTGAGGAGTGATGCTGCGGCTCCTGCTCCTCTTACTTTACTGGTGGAGCCTTGCTGGAGCTTCCCCAGAGTCCTCGCATTCTGCAGCCCATAAAGGAGATGGCCCAAAGCCATACATATATTACTGCCGCTCTCCGAACATGGAAACCTTTACTTGCTGGTGGCATCCCCTTGACAACAGTCTCCAAGGAGATGACAACATCACCTACAGGCTCATCTATACCCTTGGTAACGGGCCTCCAACAGAATGTCCGGACTATGTGAGTGGCGGACCGAACagctgttactttgacacagAGCACACAGTGATTTGGGAGGTGTACTGCATGAATGTAACGGCACACAGCAGCAGTGGTTCCGTCACCTCTAATGAGCACTGTTTGGACGTGGCCGAAATTGTCGAGATTGATCCACCTTTTAACCTCACGTACACTTTAATGAACACGACCAAGGGTGAAGCAGGTCGCACCGTACTGGTGTCCTGGCAGTACCCCATCGCCCAACATGTCCAAATTGGGTGGATTACTCTCGTCTATGAGCTTCGTTACAGAGCTGCCTCTGAACCTGACAGCTGGAAGGTCAAGGAGCGGCTACGTGAACCTCATCTGGAGCTTCTAGGCTTGTCAGTAGGAAGGTATGAGGTCCAAGTGCGCTGCCGCTCAAAAAACAGCCATCTGTGGAGCACATGGAGCTCTCCAATTACCATTGTCATTCCTTCTAGACACATGCCTgatcaCATTTTATATGCTCTTGTACTACTGACTACCATTGTAGTCATAATCTTGCTCATCATTGGATTTGGGGTCATTCCACAAGGCAAGAGGATGAAAGCTTTTCTCCTGCCGCCTGTCCCCAAACCCTGCATCAGAGGAATCGATCCCATGCTTCTGAAGAAAGGCAAAATGGATGagattaatcaacatttttctTCCCTGCAAGGCTACAAGGCACCGCTCTACTGTGGGGAGTCAGTGTACCAGGTCAGCATGGACGAAAGTGTCTCGTTATCTCAACTGAGCTCTAGGTCTAGCATCCAGGAGGATAAGGAGCCACAAGGCATGCAGAGCCCTGCCTGCACTGAAGACCAGCAGCTACTTCACACCCCTGATAGCCCCAATCCTTACTGCCAAGACCCTTCCTACTGTAGCAAAGAGTCTTCTGAGGCGACCATGACCCCTGAGACCCCTGTGTGGGCTTGGCCAGCGAAAAGCCACATGCAGCCGGAGCTGCTCTCATTCCCAGaattcagcttgAGCAACTTCCAGTGGCTTTTTCCAGACCACCTCACATATATGAAGGACTTCAGCATACACGCAAAGTACAAATAGATGTACACACTTTTACAGTACCTGAACAGTCAAGTACATAGTCTTAGTTACACACACCAGACACCAAATGATATGCACACAGCAAGATTACTATGCTTTAATGATCAGTAACTCAAGGATTATCAGTGGGTGGTTTTTGTGGATATTGCTTGCCTGCCCAAACACAGTTAATGTGTGCCAATTGGCTAATGCAAAAAGCCTAAGAGGACAGATCATCCTTTATCACTGCTCCTTGTCCTCTTCTGCCAAATCACAGTGAATGCCGCTGCTGGTCTTGTCAGATATTTCAGCAGCATTCTCACAAACTTGGAGAACTTCAGCTGCGAGCTAGAGATAGACCATCATTGGTCTGCCAGTCATTGGACTGTTCCTGTCAATTAGGGCTGCAACAGTTAACCGACAAATTCGAGTATGTCGATTATGAAAACTCATCCATGTAGATTTTTAAATTCAATGTATTATTGgctaaagaaacaaaaaagcataATAAAACTGTGCAAGCCTTTATTTTTGGGTAGAATGTAATACACTGCTGAAGCTCTTGCTGGCAGAGGAAGCAACACTGCTTGTATTTTTCCTTTGTACCATATTGCGCCGTGCACTGGACTGTTCTCAGTTGGTGcagttattataaatattaagaGATACAGTATGTTACTCAAcacatttaagatttttttttatttttaatagattCAAGAAACAAAGTGACTGATTTAACTTGCAACACATACACTGCTTGCTCAGGTTATAATGGTGGATAAAGTTATAAGGTGGATATTGGATATATCTGACCGAAAGTGGAAAAAAGCATAATGGAAGTGAATTCAATAcaattcgtgtgtgtgtgtgtgtgtgtgtgcatgcatggtgAGATATTCCAACAAAGTTGCAAAGTGACAGta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439992 lncRNA downstream 105366 6362554 ~ 6363151 (-) False LOC113537742
TU439664 lncRNA downstream 463727 6001838 ~ 6004790 (-) True G371134
TU439665 lncRNA downstream 466904 6001179 ~ 6001613 (-) True G371135
TU439687 lncRNA downstream 469043 5998848 ~ 5999474 (-) True G371153
TU439686 lncRNA downstream 470358 5998003 ~ 5998159 (-) True G371152
TU440057 lncRNA upstream 28784 6529397 ~ 6536004 (-) True G371454
TU440098 lncRNA upstream 63236 6563849 ~ 6566945 (-) True G371487
TU440232 lncRNA upstream 307880 6808493 ~ 6815071 (-) True G371595
TU440272 lncRNA upstream 367131 6867744 ~ 6867960 (-) True G371632
TU440266 lncRNA upstream 369959 6870572 ~ 6874420 (-) True pspc1
XM_026931662.2 mRNA downstream 6966 6451575 ~ 6461551 (-) True dusp27
XM_034300160.1 mRNA downstream 18598 6432009 ~ 6449919 (-) False LOC113537523
XM_026932037.2 mRNA downstream 18600 6432009 ~ 6449917 (-) True LOC113537523
XM_026932059.2 mRNA downstream 64429 6403262 ~ 6404088 (-) True LOC113537540
XM_026932313.2 mRNA downstream 76051 6384899 ~ 6392466 (-) True f7l
XM_026931834.2 mRNA upstream 105987 6606600 ~ 6610907 (-) False LOC113537384
XM_026931835.2 mRNA upstream 105987 6606600 ~ 6610907 (-) True LOC113537384
XM_026931710.2 mRNA upstream 140451 6641064 ~ 6660087 (-) True LOC113537292
XM_026932035.2 mRNA upstream 160172 6660785 ~ 6666073 (-) True hikeshi
XM_034299930.1 mRNA upstream 167610 6668223 ~ 6675921 (-) True eed
XR_004577329.1 other downstream 105314 6358639 ~ 6363203 (-) False LOC113537742
XR_004577328.1 other downstream 435124 6019687 ~ 6033393 (-) False tpp2
XR_003403780.2 other downstream 516204 5942429 ~ 5952313 (-) False LOC113537623
XR_004577339.1 other downstream 921485 5534472 ~ 5547032 (-) False LOC113537235
XR_004577289.1 other upstream 558222 7058835 ~ 7068467 (-) False LOC113537271
TU440391 other upstream 558222 7058835 ~ 7068531 (-) True LOC113537271
TU440780 other upstream 1217650 7718263 ~ 7724795 (-) True G372086
TU440974 other upstream 1411853 7912466 ~ 7916321 (-) False fam155a
TU441267 other upstream 1820371 8320984 ~ 8329026 (-) False timmdc1

Expression Profile