RNA id: XM_034300357.1


Basic Information

Item Value
RNA id XM_034300357.1
length 2089
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC113524897
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18172630 ~ 18175771 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaagcagaagaagaagaagaagcagaagaagcagaagagtcATATGTGGAGGTGGAGAGCAtgatggaggaggagtgtgtggatggaggaggagaagctGTCCTGCAGCTCCACCTGCTCTGTGATCCTCCATCTTCCTGCACGGTGTCCGTGGGGACGGATCTGTCCATGGCCGACATCTCGCAGCTCCACGCTGAAGTGTGTGAGCTCAGAGAGCTGGTGTCTGCGCTGGAGGAAATGCTGCAGCGACAGAAAGCCATAAACACtcgtcagGAGGTGACGGGAGCTACACCAGCGTTGTGCTCCATGTGTAAAGCTGAGCTCAACGCTACACAAGTGCGAGACTctgcacagagtgtgtgtgatgagcgtGAGGCGTGTGAAGTAGAGTGCGCATCACACACTCCGCTGATGATGTGTTCGGTGAAGATGGTGGACTGTAGGACCATGGAGCTGATCCCACCGGTCACGAATGATGAGAAGGAGAATGATGAAGACGGAGAACCGAACACTAACGACGAGGACGTAATTCCCCCCACCGACAGCGATGATGACGGAAGAAAACAACTGCGTGTTAACAAACTCAAACCCCAAACGAGAAAAGACGTGGGACATGGGACAAGCTGTAAGGAACGAGGATCTGAAGTGAACGGAGACGTTACGGAGACATTTACAGAGACTAAGGACCTGAAGAGCGATCGCGGCGTTCGAGAGAGACCGTTCAAGTGCTCGCAGTGCGACAGAAGCTACGGTACAGCGCCAAGCTTGCGGAACCACATGAAGAGACACGCGAAGGAGATGAGGTTCTGCTGTGAGGAGTGTGGGAAGGGGTTCGTGACGTCAGCCGAGCTGAAGCTGCACACGAGTCGACACACGGGGGTCAGCAGCTTCGTGTGTGAGGTGTGCGGACAGAACCTGGCCGGCTCGTCAGGCCTCAAAGCACACATGATGACGCACAGTGACGAGAGGCCGTTCTCCTGCAGGGAGTGTGGAAAGATCGTTCGGACGAAGGGGAACCTCAAGGCCCACCTGAGGACGCACACCGGAGAGAAGCCGTACCGCTGCTCATACTGCGAGAGAACGTTCAGCCACGCGCCGCGCGTCAAGGTGCACGAGCGCTCGCACACCAACGAGAAGCCGTTCAAATGCCAAACCTGCGGAAAGACCTTCTCGCGCCTGGACAGTCTCCGGTCGCACGAGAGCGTCCACACCGGCCTGAAGCCGTACCAGTGCTCGCACTGCGGGAAGAGCTTCCGACAGGCCAGCCACCTGCTCTGTCACGAGAGGACGCACACCGGGGAGCGGCCGTACCTCTGCTCCGACTGCGGGAAGAGCTTCTCCAGCCACGGGCACTTCCGCAGCCACCGGCGCATCCACACCGGCGAGCGGCCCTACCAGTGCACAGCCTGTGGCAAGAGCTTCAGGAAGCAGTTCACCCTACACCAGCACAGCAAGACGCACACCGGAGAGCGGCCGTACAAGTGCACGCAGTGCGACAAGAGCTTCGCACGGACCTGCACGCTGAAGCAGCACCAGAGAATGCACTCGGGGGAAAAGCCGTACCAGTGCGCCATCTGCGGCGAGAAATTCGCCTTCCTTAGCTCACTACACCAACACCGGAAAAAACATGGCCAAGACGGCGTGCATGACATCGTTAGCGCACAGTCCCTCGCTGCAGGGATCTCCTCAGGAACTTAACACGAAACACCGACAGCCTGTAGCTCCATGGGACACTAGGTGGGAAGAGGTTTGGGGAGGCCATTTTAGGTTGATGGTTGTTGGTTTGAAGGCTGTTCAGGTTTCTCAGTGCCATTCAGTGCAATATGCAAATCATTACTGCTCTACACACGTCCAGGTACTAAATAGCCAAGTccatgtgtatagtgtgtgtttttaagacTTAGCATTAAAATATTCCAGTTCTGTAAAcggtcatttatttattagttttttgtCCTTGGTGAGTAGATGTTAGTCGACATCTAGTCAAAAATCAGGTCTTTCTTTTAATTGCGTAAAGCCTTAATCGAGAATGTGAAGCtgatcatatttatatttgacTTGAGTGAATAAATcgataaataaatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU447640 lncRNA upstream 6405 18163953 ~ 18166225 (+) False rdh8b
TU447609 lncRNA upstream 62237 18110094 ~ 18110393 (+) True G377770
TU447595 lncRNA upstream 96291 18074872 ~ 18076339 (+) True G377759
TU447592 lncRNA upstream 98126 18073479 ~ 18074504 (+) True G377757
TU447591 lncRNA upstream 114609 18057461 ~ 18058021 (+) True G377756
TU447656 lncRNA downstream 28873 18204644 ~ 18206620 (+) True G377813
TU448043 lncRNA downstream 136263 18312034 ~ 18313352 (+) True G378114
TU448074 lncRNA downstream 152000 18327771 ~ 18328173 (+) True G378129
TU448081 lncRNA downstream 166462 18342233 ~ 18351811 (+) True G378136
TU448053 lncRNA downstream 182707 18358478 ~ 18360907 (+) True G378118
XM_034300366.1 mRNA upstream 7570 18158093 ~ 18165060 (+) True rdh8b
XM_034299911.1 mRNA upstream 167490 17987809 ~ 18005140 (+) True LOC113524903
XM_034299910.1 mRNA upstream 220452 17941545 ~ 17952178 (+) True soul5l
XM_034300110.1 mRNA upstream 230296 17919058 ~ 17942334 (+) True LOC113524905
XM_026911284.2 mRNA upstream 256367 17912389 ~ 17916263 (+) True LOC113524906
XM_034300354.1 mRNA downstream 117987 18293758 ~ 18309052 (+) True parn
XM_034300358.1 mRNA downstream 193273 18369044 ~ 18375405 (+) False LOC113524838
XM_034300359.1 mRNA downstream 193295 18369066 ~ 18375405 (+) False LOC113524838
XM_034300360.1 mRNA downstream 193535 18369306 ~ 18375405 (+) True LOC113524838
XM_034299917.1 mRNA downstream 206552 18382323 ~ 18549969 (+) True txndc11
trnak-uuu_20 other upstream 52893 18119665 ~ 18119737 (+) True trnak-uuu_20
TU447579 other upstream 103684 18062418 ~ 18068946 (+) True G377748
TU447580 other upstream 103684 18062418 ~ 18068946 (+) False G377748
TU447581 other upstream 103684 18062418 ~ 18068946 (+) False G377748
TU447578 other upstream 115825 18055624 ~ 18056805 (+) True G377747
TU448033 other downstream 107223 18282994 ~ 18287310 (+) True G378105
TU448127 other downstream 319069 18494840 ~ 18496043 (+) True G378160
TU448141 other downstream 367900 18543671 ~ 18548752 (+) False txndc11
XR_004577335.1 other downstream 426796 18602567 ~ 18609984 (+) True cdc37
TU448343 other downstream 605267 18781038 ~ 18822056 (+) False LOC113525834

Expression Profile