RNA id: XM_034300407.1


Basic Information

Item Value
RNA id XM_034300407.1
length 2446
RNA type mRNA
GC content 0.42
exon number 13
gene id LOC117596188
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18392430 ~ 18404667 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTCTGTTAcagctctcgctctctctctcacacgaaCTTCTGACTGCAACATCTCTGAATTTCACATAccactaatactactactgctgctgttacTAATACTAGTACTACAAAtagtaatactactaatactagtACTATTCCTACTAATACTAGTACTATTCCTACTAATACCAGTACTAACAGTAACACCACGTACAATCAGGATGGCGTATTGGTGGAGTTTTTCGGCTGAGACGTGGGCTCTGATCGTGATCCTCATCAGCCTCATCGTTCTGTATGGGTACTGGCCGTATGGTTTCTTTAAGCGGTTGGGAGTTCCTGGTCCTAAACCGGTACCATTTTTCGGAACCATGTTACAATATCGTAAGGGAATCCATAATTTTGATATGGAGTGTTTTCAGAAGTACGGCAAGATTTGGGGTATATACGACGCGAGACAGCCGGGCCTCTGTGTCCTGGACAAAGACATCATCAAAACCGTCCTGATTAAAGAGTGTTACTCTCTCTTCACCAACCGCAGAAATTTCCGTCTAAACGGTCCTCTGTACGACGCCGTGTCCGTCGTCGAGGACGAAGACTggaggagaatcaggagtgtcCTCTCTCCATCGTTCACCAGCGGCagactgaaggagaTGTTTGGAATCATGAAGTCACATTCTCGCTCTTTGGTTGAAAATCTGCAGAAGACGTCGAAGCGAGGAGAATCAGCAGATattaaagaGTTTTTTGGAGCGTACAGTATGGATGTGGTGACGAGCACAGCGTTTAGTGTCGATATCGATTCCCTGAACAACCCCAAAGATCCGTTCGTATCCAACATCAAGAAGATGCTGAAGTTTGACTTCTTCAACCCTCTGTTCCTCACTGCCATGCTGTTCCCCTTTATTGTGCCGGTGCTGGAGAAAATGGATTTTGCCTTTTTCCCGACCGCAGTGACTGATTTCTTTTATGCCTCCCTGCAAAAGATCAAGTCTGAACGTGTGGCCAAAGATCATAAGAAACGAGTGGACTTCATGCAGCTGATGATCGATtctcagaaatcagaaaaagacGATCTGAATGGCAAAGAGACAAACAAAGGTCTGAATGATCATGAGATCCTGTCCCAGTCCATGATATTCATCTTTGCTGGTTATGAGACGAGCAGCAGCACGCTGTCGTTTCTCTTTTACAATCTGGCCAGTAATCCAGAGACAATGAAGAAACTACAGGAAGAAATTGATGCAACTTTCCCTAATAAGGCTGAAGTTGATTATGACGCGGTGATGAACATGGATTATCTGGACGCTGCTCTGAACGAGTCGCTCAGGTTGTACCCAATCGCTATTCGTCTGGAAAGAGTCTGCAAAAAAACTGTTGAGATAAACGGCCTTACCATCCCAAAGGACACCGTCTTCTTTGTCCCTACTTACCCCCTACACAGGGACCCTGAATACTGGACCGATCCAGAGACCTTCAACCCTGAGAGGTTCACTCAGGAGAATAAGGAGAGCATCGACCCGTATACGTACATGCCGTTTGGTTTAGGACCCAGAAACTGCATCGGGATGAGGTTTGCCATTGTGGCCATGAAGCTGGCTGTTGTTGAGATACTGCAGAAATTCGACATCAGTCTTTCTGAGGAAATGAAGGTTCCTCTGGAGCTGAACAACAGTGGACTTCTGGCTCCTAAACACCCCATAAAACTCAAATTCACGCCTCGGAAAATGTCAAACTCCTGCAACAATAACCACAGTAACTCGTAGACTCTGAGGCTTTCCTTCCTTACAGTCAGTCTgtatttgaaattgaaattcatATTAGGTGTATAATGATGCAATAAAATCACAGTGTGAGAAATTATCCAACACTGTATAACaatttttactgtaaatgttgtttaatgtgttaaatgttgaaataaatctctctctcatttacacacattcctAATAAGATTTAAATGTCATGTAGCAGATTTTACTTGTGATTTTACTGTGATATAGAATCAATATAGCATaatattaaatgtgactatTAATGTGACTATTTCAGatttactgtctatgtggagtttcaggttctctctgtgtccatgaAGGTTTCCTTAAtgtatatgactgtgtgtgatggtgtccTATGccaccctgaacaggataaagctcttactgaagatatCATCACTGAAGAAATCATCACTGTAAACAAAGTTCAGTACTACAAATTTAAACAGAACAGCAAGACAGAAGTCCAAAAGTCAATGTTTTCTGTTATGTACACACAATCTCTATCACATTTATCAGTTTATTGCTAGATGTTGGCAGGATTGTGGTCTGAATGATCCGCTGTACACTGCTCTCTTCTTGACCAAAGATGAGTACTGGAAGAAAATCTTGTATTTTTGTGGTGTTAAACTGCATCTGTCCATTAAAAGGAAACCGTTGTTGCATGTAAACTTCCA

Function

GO: NA

KEGG:

id description
K17689 CYP3A4; cytochrome P450 family 3 subfamily A4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU448249 lncRNA downstream 2257 18387076 ~ 18390173 (-) True G378239
TU448251 lncRNA downstream 16893 18335677 ~ 18375537 (-) True G378241
TU448257 lncRNA downstream 21661 18370282 ~ 18370769 (-) False G378247
TU448215 lncRNA downstream 81774 18310283 ~ 18310656 (-) True G378220
TU448233 lncRNA downstream 83501 18308412 ~ 18308929 (-) True G378232
TU448269 lncRNA upstream 17950 18422617 ~ 18423142 (-) True G378252
TU448280 lncRNA upstream 101438 18506105 ~ 18570213 (-) True G378254
TU448291 lncRNA upstream 139004 18543671 ~ 18544156 (-) True G378265
TU448306 lncRNA upstream 204529 18609196 ~ 18610008 (-) True G378274
TU448302 lncRNA upstream 206810 18611477 ~ 18625171 (-) False LOC113524840
XM_026911218.2 mRNA downstream 12665 18376579 ~ 18379765 (-) True LOC113524859
XM_026911221.2 mRNA downstream 24918 18366099 ~ 18367512 (-) True LOC113524861
XM_034299916.1 mRNA downstream 26499 18361798 ~ 18365931 (-) True gpank1
XM_034300361.1 mRNA downstream 31750 18340493 ~ 18360680 (-) True LOC113524862
XM_034300410.1 mRNA upstream 2237 18406904 ~ 18471323 (-) True LOC113524842
XM_034300409.1 mRNA upstream 46941 18451608 ~ 18471315 (-) False LOC113524843
XM_034300408.1 mRNA upstream 53837 18458504 ~ 18471315 (-) True LOC113524843
XM_026911195.2 mRNA upstream 70731 18475398 ~ 18483881 (-) True LOC113524841
XM_034300411.1 mRNA upstream 87705 18492372 ~ 18496794 (-) True thumpd1
TU448264 other downstream 19945 18371581 ~ 18372485 (-) True G378247
TU448228 other downstream 26509 18363443 ~ 18365921 (-) False gpank1
TU448229 other downstream 26509 18363443 ~ 18365921 (-) False gpank1
TU448230 other downstream 26509 18363443 ~ 18365921 (-) False gpank1
XR_004577358.1 other downstream 225470 18163546 ~ 18166960 (-) False LOC113524896
TU448303 other upstream 206810 18611477 ~ 18618929 (-) False LOC113524840
TU448328 other upstream 285856 18690523 ~ 18699340 (-) False LOC117596153
TU448331 other upstream 297543 18702210 ~ 18703592 (-) False LOC117596153
TU448405 other upstream 466028 18870695 ~ 18879896 (-) False LOC113524858
TU448416 other upstream 537812 18942479 ~ 18943175 (-) True G378357

Expression Profile