RNA id: XM_034300415.1


Basic Information

Item Value
RNA id XM_034300415.1
length 1341
RNA type mRNA
GC content 0.52
exon number 6
gene id LOC117596190
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 18385927 ~ 18390650 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccctgttcACACAGAGCGacagcgCAGTGTTCTccactccctctctcccctcctcCGTCTCTCGTATGATTGACCGGCGGCGTgtgtgtgggcggagcttcttGGAGGAATGCGTGTCCCTGTTGGGTTACAGCCGTGAGGACGTGGAGGCGGTGCAGGAGGTCATGGTCGCTGTGGAAACGGGGGAGGAGTTTGGCATCAACCTGCAGGACTTGTACAGGAAATGCACACACCTGGAACAGGTGGAGAAGGGGCGGAGCAAAACGCTGCAGCAGTACATCCAGgatctGTTAGACTGTGAGAAGGTGTTGGAGGTGGGCGCTCTCTCTCCACGCTTGGTCTGCATGGACTTCGCTGTTCCGTGGCTGCTGCAGTGCCCCAAAGTGTCTGAAGAGCCATGTCCCTCCCACAAGATGCCCCACCCACCACCACTGACATCACTCCCGAAGCTCCGCCCTCCTCCTCAGATGTCACCGCTGAAGCACTGCCTACTTCACACAAGCCACCACTAAAGAGACTGTTAGATCAGACAgacggtgatgatgatgatgttgatgtagTCCCTCCTGTCAAGAGACCCACCATGGAGACTGTTGCTATGGAGACGGGGGAATCCAGTGCAGAAGAGGGCAGGGTTAAAACTTCTCTTCCGGATCCACCCTCTTCTGATAAACAGGAAGTGGCGCACAGTGATGATGCGTCGGCTTTGCGCAAGTGTGACGGTTTAATTAAGGAGGAAAACGTGACACAGAcccaaggTGGAGAGAATGCTGAGATctcagaggaggaggatgtgttgaGCTTCGTAGCTCGTCCGTGGCGTGTCGTGGATGGGTCTCTGAACAGGCCTGTGTGTAAGGGGATGTTAGAGGCACTGCTGTTACACATCATGACACACCCTGGTGTTCCTGAACCGGCActgctgcagcattacagcGGAGTTCTGCAGCCCATGGTCATCCTGGATCTGctaaaggtTCTTGAAGAGTTGGGGTGTGTAATAAAGCGTTTTACAGTTAATCGCCCCAAAGCGTCTCTGTTTTCTCGCTCTGGCATTCccaaggtcaaaggtcacggAGAGGTCAGTGTGATGGAGGATGTGGTGGCGTTTTACGAGCCCACGGTGGACTGCAGTTTAAGAATCTCTAAGCTCTTCCCTCATGAGTCTAGCTGGAACAGATGGGTACAGCTGTGTGcacgctgaacacacacacacacacacacacacacacacactcacactcatgtccaaaattagtgtttttatttaacttaattgcGGCTATAATTAAAGCTATTTGTGATTTCTgtgcaaaatgaataaagagagttttatttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU448053 lncRNA upstream 25098 18358478 ~ 18360907 (+) True G378118
TU448081 lncRNA upstream 34194 18342233 ~ 18351811 (+) True G378136
TU448074 lncRNA upstream 57832 18327771 ~ 18328173 (+) True G378129
TU448043 lncRNA upstream 72653 18312034 ~ 18313352 (+) True G378114
TU447656 lncRNA upstream 179385 18204644 ~ 18206620 (+) True G377813
TU448107 lncRNA downstream 9943 18400593 ~ 18401249 (+) True G378150
TU448108 lncRNA downstream 13184 18403834 ~ 18404653 (+) False G378151
TU448110 lncRNA downstream 13184 18403834 ~ 18459466 (+) True G378151
TU448134 lncRNA downstream 145001 18535651 ~ 18536333 (+) True G378163
TU448142 lncRNA downstream 160213 18550863 ~ 18551872 (+) True G378166
XM_034300358.1 mRNA upstream 10600 18369044 ~ 18375405 (+) False LOC113524838
XM_034300359.1 mRNA upstream 10600 18369066 ~ 18375405 (+) False LOC113524838
XM_034300360.1 mRNA upstream 10600 18369306 ~ 18375405 (+) True LOC113524838
XM_034300354.1 mRNA upstream 76953 18293758 ~ 18309052 (+) True parn
XM_034300357.1 mRNA upstream 210234 18172630 ~ 18175771 (+) True LOC113524897
XM_034300406.1 mRNA downstream 108338 18498988 ~ 18504740 (+) True LOC113524839
XM_034300412.1 mRNA downstream 132511 18523161 ~ 18527596 (+) True LOC117596189
XM_034300236.1 mRNA downstream 211917 18602567 ~ 18608877 (+) False cdc37
XM_026911214.2 mRNA downstream 273437 18664087 ~ 18674601 (+) True sp6
XM_034300150.1 mRNA downstream 390536 18781186 ~ 18804485 (+) True LOC113525834
TU448033 other upstream 98695 18282994 ~ 18287310 (+) True G378105
trnak-uuu_20 other upstream 266268 18119665 ~ 18119737 (+) True trnak-uuu_20
TU447579 other upstream 317059 18062418 ~ 18068946 (+) True G377748
TU448127 other downstream 104190 18494840 ~ 18496043 (+) True G378160
TU448141 other downstream 153021 18543671 ~ 18548752 (+) False txndc11
XR_004577335.1 other downstream 211917 18602567 ~ 18609984 (+) True cdc37
TU448343 other downstream 390388 18781038 ~ 18822056 (+) False LOC113525834
TU448412 other downstream 546850 18937500 ~ 18942328 (+) True G378354

Expression Profile