RNA id: XM_034300420.1


Basic Information

Item Value
RNA id XM_034300420.1
length 1673
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC117596192
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2874908 ~ 2892085 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGGGAACAGGAAGGCCGCACATCCTCTTAAACCCCACCCCCAGAACCATGCTGCAGCCAGAGACAAAAGaacagctctgacccatcgaggcatggactccacgagacctctgaaggtgtgctgtggtacctGGCACTGGATGGGCTACCCTttgctccccacacgcatcactgagccttgggcgcccatgaccctatCGCCGGTTCaacggttgtccttccttggaccacttttgCCCAGCACCAATGAATGTTTATCTCTCTACAACATGACAAGGACACCGAGGACACCGAGGACACCAGCCCTCCAGTTCACACCAGACTTATTCATAGTCAGCGAGGTAGAAATATCTGATCTTGTCATTTATATGGGGTGGAAAAATGCCTTGGATACTGGAGGAATTTCTCCAGAGACAGAGAACTCAAGGTGGACTAGCGCTTCCCAACTTCAGGTTTCAACTTCAGGGCTGCAAACATTTCAAAAGTACCTTATTGGCTTCAGAACCCAAAGGATGTCTGGTGTATTCCAGAGGCAAATTCTTGTCCATCATCATCCCATCCAGCTCTTGCTTTACCCAAATTGCTCCTATCTATTTCAACATATATGCATTGTCCAGTTGTAGCAAACATCCTCAAGATTTGGTTTCAAATTAGAAAATGTTTTGGTTTCCTTGACCTCTCCTTAAGCAGCCCTATATGCAAGAATCATCTATTCCTTGGACTAGCTCAGTTAGACCCAGCTTTTATTCGGTGGAGCCGAGTAGGTCTTGTTAAATTTAGTGACCCATTCATTGATGAATCTCTTGCTCCATTTTCTACTCTCACTTCAAAATATAACCTTCCAAggtcatatttatttagatataTTCAGTTTGTCATTTAATCCAGACCCAATGTCACACCTATCCTTCCATTCTTCCCAGCTCAGTATTGGATGTCATTGTAAATATTCCCTTACATTCAGAGGGAGTAATTGCTAATGCATATAATACTTTACTGTCAATACAAAATATGAAACTGGAAAAATCCAAGCAGACTGGATAAAGGAGCCAGGAGTGGACATATCAGAGGAAACCTGGAATGGTGCACTAGCTTGAGGAAATGGAACAACCTCTTGTACTTGCCTAGATATAATTCAGTTTAAGGTCCTTCACAGACTCTACTACAGCAAGGCAAGGCTGTCCAAGATATATTTACATTTGGATGACACATGTGACCGATGTCACTCTGCAAAAGCGGACTTGGATCATATGTTTTTGGCTTGCCCTAGACTGTCTGACTTCTGGACAACTATCTTCAAAATTTTGTCTGAGGCATTTAGTAAGGAAATCAGGCCTTGTTTTGAATTGGCTGTTTTTGGAGTGCCAGAGGAAGGAGTTGTCATGTCCAAAAAGTGTCAGGATGCTTATGCTTTTGCTGGTCTCCTGGCCCGGAGAAGACTACTACATGATTGGAAATCGAAATCGAATTGGAATTCACTCTGGCTTGGCGACGTGATGGTGTTTTTGAATTtggagtaaataaaatattcacttaGAGGATCcactaaacatttttattcgGTATGGAATCTCATGAATTTATACTTTGAAAAGTGCATAACTCTCCCCTCAATCTAAAATTATAAGTAGAATCAGAAGACCTTTGGGCATGGATATCACAATCAGACAGG

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577338.1 lncRNA downstream 21697 2846380 ~ 2853211 (-) False LOC117596167
XR_004577337.1 lncRNA downstream 21700 2846380 ~ 2853208 (-) False LOC117596167
TU438334 lncRNA downstream 53594 2818603 ~ 2821314 (-) True G370019
TU438351 lncRNA downstream 84232 2783272 ~ 2790676 (-) True G370028
TU438342 lncRNA downstream 84854 2771253 ~ 2790054 (-) False G370023
TU438470 lncRNA upstream 57336 2949421 ~ 2984930 (-) False G370127
TU438468 lncRNA upstream 72183 2964268 ~ 2984930 (-) True G370127
XR_004577320.1 lncRNA upstream 147089 3039174 ~ 3052202 (-) True LOC117596157
TU438554 lncRNA upstream 177913 3069998 ~ 3072601 (-) True G370207
TU438584 lncRNA upstream 283059 3175144 ~ 3176945 (-) True G370237
XM_026928791.2 mRNA downstream 36119 2833613 ~ 2838789 (-) True LOC113535482
XM_026928792.2 mRNA downstream 47308 2823993 ~ 2827600 (-) True LOC113535483
XM_034300419.1 mRNA downstream 63299 2808317 ~ 2811609 (-) True LOC113535756
XM_026928790.2 mRNA downstream 70779 2797268 ~ 2804129 (-) False LOC113535480
XM_026928789.2 mRNA downstream 70779 2797268 ~ 2804129 (-) True LOC113535480
XM_026928711.2 mRNA upstream 190985 3083070 ~ 3170485 (-) True gpc5a
XM_034299954.1 mRNA upstream 719634 3611719 ~ 3618120 (-) True LOC113535432
XM_026928713.2 mRNA upstream 719634 3611719 ~ 3616892 (-) False LOC113535432
XM_034300309.1 mRNA upstream 1596064 4488149 ~ 4504739 (-) True LOC113535753
XM_026928684.2 mRNA upstream 1619185 4511270 ~ 4517988 (-) True cnpy3
TU438365 other downstream 21697 2843212 ~ 2853211 (-) True LOC117596167
XR_003403632.2 other downstream 300437 2566757 ~ 2574471 (-) False LOC113535702
TU437816 other downstream 1079684 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 1275164 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 1598095 1276021 ~ 1276813 (-) True G369242
XR_003403643.2 other upstream 1565350 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 1567232 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 1569124 4461209 ~ 4461315 (-) True LOC117596197
XR_004577367.1 other upstream 1571023 4463108 ~ 4463214 (-) True LOC117596198
XR_004577360.1 other upstream 1632417 4524502 ~ 4524784 (-) True LOC117596183

Expression Profile