RNA id: XR_003403765.2


Basic Information

Item Value
RNA id XR_003403765.2
length 5651
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id LOC113537484
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5345595 ~ 5365148 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

catattcataCAATACAGTGTTTGCAGTTATGTTAGTGTCTGGGTTCTCTAGTTATCTGTCCAAAATTACTGGAGATGGACAGAAAAGCAACGGTTTGCACAAAGAACAGGTGGTCATGTCTCCAGTAGTCCCACAGTAAACGGGTGCAGGCGCGTGCACGAGGAGGCCTCGCTGTCTGAGCGGCTGCGGTTACTGACAACGCTCTGGCTCCCATCCTGACCTACTGCACAACCTCAGTCAAAAACTGTGACATTCAGTTccaccaaaaaacaaaagacttcAAAACCgcacaatgggcctcatttaatCACGCTctgctcccgttcaGGGTCACCACAACAGTTCACCCATCTGCATATTTGGATTCTGGCACAAGTTTtttgccagatgcccttcctgacgcaaccctccccattttccgggcttgggaccagcactgagattGCACTGGCTTGTGCAACCCTCCAGTGGCTGCGGTTGGCTACCCACTAGTTCACCAGGGAACCTTGAACTTCTGGATTATGATAGAACACAACTCCACTTGAGCTCACTGATCAGACCAGGCTGAGAGCTATCACAGTGGGGCAAAATAGTTTAATGAGCACACTTCATCTTGCCACCTCTATGTACAAGACCTCCTGCCTGCTACACCCATAAATAATGGGAACGCAAATGCTACATTAGCCGCTGTTACTAGCTACTATCTTCGATTCACTTGTAAACCAGTGTGAATCTTGACTTGACCCTTGACCactctacattttttaaaaatccagatttataatataggagTAATGTAAGATTtgaagataatcctttattcatCCCCAATTGGGAAATTTGatttgttacagcagcagatataaagatataaaaaaaaattaaaaaatatataagtataaaaatatgaaagagagacacaccaagaatgcacaaaaacacaaacacacaacagtattaaaTTGACCAAACTGCATTATTGCactgttcccatgagacggGGGGTTACCAAAGATTTATTGTCCAATTTAGTACCAGGGATTTATTGTCCAGTTAAGTGGTGGGGTCTGCTGGGAGCGGTGCTGGTTGTACAGTCTCACAGCAGCAGGGAAGAAGGACCTGCGATACCACTCCTTCACACACTTGGGGTGGAGCAGCCTGTCACTAAAGGAGCTGCCCAGTGCCACCAGAGTCTCATGCATGGGGTGGGAGTCTTTCTCCAGCATATGTGATAGCTTGGCCATCATCCTCCTTACTCCAGTTTACAACAGTGTGCAAGTATGTGGTTTGAATCATAACACTGTTTAGTGGAGGTAGATGGACggggaaatttgtccatttttattgcttgaACTACACTAGTGCATCATGTCAGGATAGTAAAATAAcactaaaataacacaaactcCATTACTTTAAATGcggcttgtctgaatgtgactcccagtaacatttcaaaatattaacacacaaaatctgtctttgatatttctaatataaattattttaagttaTTGAATGAAACAAAGAAGAGACTGCGAGTTTCTCTTGCAACCCCATTTGTAATTCAAGCAACCCTATGTGAGGTTGCTAACCCTACTTTGGGAACCTCTGGTCTAACCTTTCAAACTCATCTGTAATTtgctttatgtatttattgtcacAAAGTTTGCTTTGTTACAGACATTGTACATCCCTGCATATGATGTGgtgatataaatgtaaaagataCATAGATGTCAAATCTTTGAAAACACTATACGATATGGGACATTCTTAATGgttgatgtactgtatatattttggtACCTGTAATGCCTTCACTTGTTCCTTTGATTTCGTCTTGGGGTTCATTTGAACCTTTCAGACCAAAGTTCATCACTGGGAGTTAGGTTGTGCATCTGTCCTGAACAATGCAatgtctgtgtggtcccaagatttttttatatttgcatagaATTGTTTGTACAAAtgcttgtggtaccttcagtttggaaattgctcctaaggaggaaccTGACTTGTGGAGGTCTACAGTCTTTTTCTGAGGTATTGGATGCGTTGCTTGTATTTTTCCATGGTATTGAGGGCAGTAAGGCACTGTCTCTAAAGGTATACATTTTACAGCCACAGGTGTGCTCCCAATTTACTCCTAATTACGACCAGTGGCCAATCAGAAACTTCTAAATGTCAtgacatcaatttctggaatcttccaggctgtttaaagagacagtcagcTTGATGTCTGTAAAATTTTGACCTACTGGAATTctgaaaatgtgaattaaagttgaaataaatttgtctctaattgattgtttttaaattacttttggCGTGAACAAAGTAGAGGCCCTAATTGACTTGTCAAAAGAAATTGTGAAAAATGACATAGAATATCTTTAgccaaggtgtatgtaaaccttTTGCTGCATCTGTACGTGAGATACCATTTCATACAGTTGTAATTGCATACAATTGTATGTCAATGCAATATAATAAAGTTTTGTAACAATGATATcccagcatttttaaaaaattatattgagGCTTTAAATTTATATTGGCATCAAATACTTTACTATTACTCACTATTGTAATCAGTTCTTCATTTCTGTCCACAAAGAATAGAAAGTTGTTTTTTAGCCCATTTGGACGAGTTGTGGATTCTATGTCTACCATTCCTATTCGAGGGGGTATGGCTTCTATCTCTGTCAATCTTATAGGAGGAGGGGTGATTGCTGTGGCTTCTGTACCTTTCAGTCTTATTAGAgaaggtgtggcttctgtgtctatCACTCCTTCTGGAGAAGGTATGACATCTAGGTGTCTATCACTTCTATTGGAGGAGGTATATCTTCTGTCTATCAGTTTATTGTAGGAGGGGTGGCTTCTGTTAAGGTTAATTTACCTTAACCTGGTCCAGCTTCCTGGGCCAACAGTAGAGGTCTGGTTGGatctttgtctttgtttaatGCCCTGGGTAATATCTGTTTGACAGGTTTATTTGGGTATATTCTGATTGCTCAGTTCTCCCTATGTAAGGTTTTATGCATGTTTTAAAATCTGCTGTCTAGCAGTCTTGGCCCAGCAGTGGGGTAGTATTCTGCCAGGAGTAGACATCTTGCTACTACTTATTGGCCTTTAATCTATGATAAAGTATAGTGTCTGTTGTTATCACatttatatgtgtaatatatccTTTATATGATGACTTTatgttaaacagatttttatttcattttccttctACTTGTTCATGGttagcattttttaatttattatttttagagaCAATTACCTAGCATTAAATTATTGGTAGGATTAGGATTTCACTAAGTTTATTGTTTGTCTAGGATTAGGTTTCATGTTTGAAATTATTATGTGTCTAAAATTAAGCaagtgtggcttctgtgtgtaTCAGTCCTATTGGAGGATGTGTGTTTGCTCTGTTTATCAGTCCTGTTGGAGGTGGCATGGTTTCTCTGTTAGTCAGTCTCTACTGGAGGAGGCCTGGCTTCTGTGCCTATCAGTACTAttggaggaggtgtggcttctgtgtctacCATTCCTATTGGAGTGCGTGTGGCTTCTATGTATGTCATTCTTATTGGTGAAAGCATGGCTTCTGTGTCCATCAGTTCTATTGGAGGATATTATCCCAAAATGTCAATTTCGCAACCCGTGGAACACAGTGGACCTTGTGTACCCAAACACACATGGCTCATATGCTCCACCTCGGCTGCTCAGGCCAGTATTGTGGGCCGTGTACATCTGCTGTGTCAGggttagataaaaaaaattgctgcaaTCGTTGGTGAAACTTCCCTGAAAGGAATAATCCCTAATGGAGACACCGGAAGTGTAATTGCTTCAACCACAGACGAGACCATCTCAAGATCCATAGTATTTGTCATGTCCTCTTCAACAAACCCTGCTGGCTTGGTGATCTTCAGCATCCATTCCCTCCAAACTGTGGGTCTTTTTTGGATGGGAAATAGCTCTCAAACTCCGCTGAGAGTGCACACAGGTGATTCTGCATGAGGTTTGACAAGTGTGGGCTTGTTCTTTCTCCCATGTATTCTGTGTATAACTGGAACATGTCATAGACAGCTCTCAACCCTCTTTGTCTAAGAATCTAGTTTTGCTTTGAATGCAAACACTTTATCAGCCATTCTAAATACTGTTTACATTTAAGTCAGTAAGCCAGACCCCTtctcggaaaaaaaaaatcagttttagtGGCTGACTTAGTTCCATCACCCAAGCTACGGCCTTGCCACAGGCCAGTCATTGGCCTTCTGTGTGTAGAAGGAGCCATGTGTGTTCCATGTCTATGTCCTCACGCAGTTGTTCAAACAAGCAAGTGTTAAATGTGCATGCTTTGACAAAATTTATTATCTGAATCACATCATTCAGTACACCAATCATTCATTCACCAATCACCAATCACCCATCAATCATTCAGTACACCATTGGGCTCCATTGATAGTCCAGCATCACAACGAATGatacagtgagtgagtgagcagtTCAGTGAGCAGTTTCACCCAGGCTGTGAAAACATGCAAGTGGCCTGTCATTGCCGTGGCACCGTCAGTGAACTCACCCACACAGAAAGCCCAGCTAAGTTTACCAGACATGCGTTTGTCCAAAGCtgtacagttgaggccaaacaTTTACTTACACTTACGCTACTAggcaactcagccaagacctcagaaaaaaatttTGTGGACCTCCACAGGTCCAATCCCTGGAGCAGGTCCACAGGTCCAATCCCCGGAgcagcaatttccaaacaactgaaggtaccacaagcaTCTATACAAgcaattgtatgcaaatataaaaatcttgggaccacacagatACTGCATCATTTAGGAATGAGGCATCCCCAGGGATGAAGGAACTTATGAATGGcatcattaaatataacatCATGGCTCCCTTTGTACTTGTGTTATACCTTCTTTAAAGGTCTCTTTCCTCCAGCATTTAGCACAAAAGCAAAAAGGCATGTTAACCAGCAGAGGGAGCTGGATCTCTGtatatcactcactcactttcattaaccattttcctggtcagggtcatggtggatcctgGATGGGAggccacttcacacacactcattcattcacacgTATAGGAGCAAGTTATCCACCTACtatcatgtttttgggaggtgggaagaaactgaGATACGAAAACATatgtggacacagagagaatgtGTACAGAAACTCCGCACAGACAGTTACTCTAGTTCAGAATTGAATAGGGGACCTTACTCTCTGTGCCACTGCAAAGAATGTCTCTGTATATTCATTAATCTACTTATTGTCAGGGTTGCAGTTAATTTAGAGCCTATCTTTtgtaggaatacaccctggatgggatgccagtccatcacagggcaccatgcatgttgggaagtggaaggaaacttgagaaaacacacaaatattatCCCAAAACCAGGTGTAAATTATCTTGATGTAtgccactttgctgttataataacctccactcttctgggtaGACTTTCCACTGTATTTTGGAGCATGGCattggggatttgcccattcagccacaagagccttagtgaggtcaggcactgatgtcatgCAAGtgccagttc

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439294 lncRNA downstream 14159 5342755 ~ 5343080 (-) True G370853
TU439284 lncRNA downstream 107143 5249832 ~ 5250096 (-) True G370845
TU439276 lncRNA downstream 116963 5240065 ~ 5240276 (-) True G370837
TU439275 lncRNA downstream 119227 5236722 ~ 5238012 (-) True G370836
XR_003403756.2 lncRNA downstream 165592 5190347 ~ 5191647 (-) True LOC113537335
TU439334 lncRNA upstream 23756 5388904 ~ 5394769 (-) True LOC113537294
TU439337 lncRNA upstream 24182 5389330 ~ 5394769 (-) False LOC113537294
TU439338 lncRNA upstream 24475 5389623 ~ 5394769 (-) False LOC113537294
TU439333 lncRNA upstream 24674 5389822 ~ 5394769 (-) False LOC113537294
TU439335 lncRNA upstream 24674 5389822 ~ 5395012 (-) False LOC113537294
XM_026931789.2 mRNA downstream 16718 5331920 ~ 5340521 (-) True LOC113537353
XM_026931790.2 mRNA downstream 16723 5331920 ~ 5340516 (-) False LOC113537353
XM_026931938.2 mRNA downstream 41044 5305078 ~ 5316195 (-) True LOC113537467
XM_026931939.2 mRNA downstream 59066 5288685 ~ 5298173 (-) False LOC113537467
XM_026931936.2 mRNA downstream 80147 5269510 ~ 5277092 (-) True LOC113537466
XM_026931711.2 mRNA upstream 24650 5389798 ~ 5394812 (-) False LOC113537294
XM_026932107.2 mRNA upstream 44463 5409611 ~ 5412773 (-) True urp2
XM_026931627.2 mRNA upstream 164844 5529992 ~ 5547031 (-) False LOC113537235
XM_026931631.2 mRNA upstream 169267 5534415 ~ 5547031 (-) False LOC113537235
XM_034300297.1 mRNA upstream 170137 5535285 ~ 5547032 (-) False LOC113537235
TU439054 other downstream 467858 4843329 ~ 4889381 (-) True G370658
XR_004577360.1 other downstream 832455 4524502 ~ 4524784 (-) True LOC117596183
XR_004577367.1 other downstream 894025 4463108 ~ 4463214 (-) True LOC117596198
XR_004577366.1 other downstream 895924 4461209 ~ 4461315 (-) True LOC117596197
XR_004577365.1 other downstream 897816 4459317 ~ 4459423 (-) True LOC117596196
XR_004577341.1 other upstream 169267 5534415 ~ 5547032 (-) False LOC113537235
XR_003403738.2 other upstream 169267 5534415 ~ 5547032 (-) False LOC113537235
XR_003403737.2 other upstream 169267 5534415 ~ 5547032 (-) False LOC113537235
XR_003403739.2 other upstream 169267 5534415 ~ 5547031 (-) False LOC113537235
XR_004577339.1 other upstream 169324 5534472 ~ 5547032 (-) False LOC113537235

Expression Profile