RNA id: XR_004577333.1


Basic Information

Item Value
RNA id XR_004577333.1
length 4502
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id LOC113537484
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5345595 ~ 5365148 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

catattcataCAATACAGTGTTTGCAGTTATGTTAGTGTCTGGGTTCTCTAGTTATCTGTCCAAAATTACTGGAGATGGACAGAAAAGCAACGGTTTGCACAAAGAACAGGTGGTCATGTCTCCAGTAGTCCCACAGTAAACGGGTGCAGGCGCGTGCACGAGGAGGCCTCGCTGTCTGAGCGGCTGCGGTTACTGACAACGCTCTGGCTCCCATCCTGACCTACTGCACAACCTCAGTCAAAAACTGTGACATTCAGTTccaccaaaaaacaaaagacttcAAAACCgcacaatgggcctcatttaatCACGCTctgctcccgttcaGGGTCACCACAACAGTTCACCCATCTGCATATTTGGATTCTGGCACAAGTTTtttgccagatgcccttcctgacgcaaccctccccattttccgggcttgggaccagcactgagattGCACTGGCTTGTGCAACCCTCCAGTGGCTGCGGTTGGCTACCCACTAGTTCACCAGGGAACCTTGAACTTCTGGATTATGATAGAACACAACTCCACTTGAGCTCACTGATCAGACCAGGCTGAGAGCTATCACAGTGGGGCAAAATAGTTTAATGAGCACACTTCATCTTGCCACCTCTATGTACAAGACCTCCTGCCTGCTACACCCATAAATAATGGGAACGCAAATGCTACATTAGCCGCTGTTACTAGCTACTATCTTCGATTCACTTGTAAACCAGTGTGAATCTTGACTTGACCCTTGACCactctacattttttaaaaatccagatttataatataggagTAATGTAAGATTtgaagataatcctttattcatCCCCAATTGGGAAATTTGatttgttacagcagcagatataaagatataaaaaaaaattaaaaaatatataagtataaaaatatgaaagagagacacaccaagaatgcacaaaaacacaaacacacaacagtattaaaTTGACCAAACTGCATTATTGCactgttcccatgagacggGGGGTTACCAAAGATTTATTGTCCAATTTAGTACCAGGGATTTATTGTCCAGTTAAGTGGTGGGGTCTGCTGGGAGCGGTGCTGGTTGTACAGTCTCACAGCAGCAGGGAAGAAGGACCTGCGATACCACTCCTTCACACACTTGGGGTGGAGCAGCCTGTCACTAAAGGAGCTGCCCAGTGCCACCAGAGTCTCATGCATGGGGTGGGAGTCTTTCTCCAGCATATGTGATAGCTTGGCCATCATCCTCCTTACTCCAGTTTACAACAGTGTGCAAGTATGTGGTTTGAATCATAACACTGTTTAGTGGAGGTAGATGGACggggaaatttgtccatttttattgcttgaACTACACTAGTGCATCATGTCAGGATAGTAAAATAAcactaaaataacacaaactcCATTACTTTAAATGcggcttgtctgaatgtgactcccagtaacatttcaaaatattaacacacaaaatctgtctttgatatttctaatataaattattttaagttaTTGAATGAAACAAAGAAGAGACTGCGAGTTTCTCTTGCAACCCCATTTGTAATTCAAGCAACCCTATGTGAGGTTGCTAACCCTACTTTGGGAACCTCTGGTCTAACCTTTCAAACTCATCTGTAATTtgctttatgtatttattgtcacAAAGTTTGCTTTGTTACAGACATTGTACATCCCTGCATATGATGTGgtgatataaatgtaaaagataCATAGATGTCAAATCTTTGAAAACACTATACGATATGGGACATTCTTAATGgttgatgtactgtatatattttggtACCTGTAATGCCTTCACTTGTTCCTTTGATTTCGTCTTGGGGTTCATTTGAACCTTTCAGACCAAAGTTCATCACTGGGAGTTAGGTTGTGCATCTGTCCTGAACAATGCAatgtctgtgtggtcccaagatttttttatatttgcatagaATTGTTTGTACAAAtgcttgtggtaccttcagtttggaaattgctcctaaggaggaaccTGACTTGTGGAGGTCTACAGTCTTTTTCTGAGGTATTGGATGCGTTGCTTGTATTTTTCCATGGTATTGAGGGCAGTAAGGCACTGTCTCTAAAGGTATACATTTTACAGCCACAGGTGTGCTCCCAATTTACTCCTAATTACGACCAGTGGCCAATCAGAAACTTCTAAATGTCAtgacatcaatttctggaatcttccaggctgtttaaagagacagtcagcTTGATGTCTGTAAAATTTTGACCTACTGGAATTctgaaaatgtgaattaaagttgaaataaatttgtctctaattgattgtttttaaattacttttggCGTGAACAAAGTAGAGGCCCTAATTGACTTGTCAAAAGAAATTGTGAAAAATGACATAGAATATCTTTAgccaaggtgtatgtaaaccttTTGCTGCATCTGTACGTGAGATACCATTTCATACAGTTGTAATTGCATACAATTGTATGTCAATGCAATATAATAAAGTTTTGTAACAATGATATcccagcatttttaaaaaattatattgagGCTTTAAATTTATATTGGCATCAAATACTTTACTATTACTCACTATTGTAATCAGTTCTTCATTTCTGTCCACAAAGAATAGAAAGTTGTTTTTTAGCCCATTTGGACGAGTTGTGGATTCTATGTCTACCATTCCTATTCGAGGGGGTATGGCTTCTATCTCTGTCAATCTTATAGGAGGAGGGGTGATTGCTGTGGCTTCTGTACCTTTCAGTCTTATTAGAgaaggtgtggcttctgtgtctatCACTCCTTCTGGAGAAGGTATGACATCTAGGTGTCTATCACTTCTATTGGAGGAGGTATATCTTCTGTCTATCAGTTTATTGTAGGAGGGGTGGCTTCTGTTAAGGTTAATTTACCTTAACCTGGTCCAGCTTCCTGGGCCAACAGTAGAGGTCTGGTTGGatctttgtctttgtttaatGCCCTGGGTAATATCTGTTTGACAGGTTTATTTGGGTATATTCTGATTGCTCAGTTCTCCCTATGTAAGGTTTTATGCATGTTTTAAAATCTGCTGTCTAGCAGTCTTGGCCCAGCAGTGGGGTAGTATTCTGCCAGGAGTAGACATCTTGCTACTACTTATTGGCCTTTAATCTATGATAAAGTATAGTGTCTGTTGTTATCACatttatatgtgtaatatatccTTTATATGATGACTTTatgttaaacagatttttatttcattttccttctACTTGTTCATGGttagcattttttaatttattatttttagagaCAATTACCTAGCATTAAATTATTGGTAGGATTAGGATTTCACTAAGTTTATTGTTTGTCTAGGATTAGGTTTCATGTTTGAAATTATTATGTGTCTAAAATTAAGCaagtgtggcttctgtgtgtaTCAGTCCTATTGGAGGATGTGTGTTTGCTCTGTTTATCAGTCCTGTTGGAGGTGGCATGGTTTCTCTGTTAGTCAGTCTCTACTGGAGGAGGCCTGGCTTCTGTGCCTATCAGTACTAttggaggaggtgtggcttctgtgtctacCATTCCTATTGGAGTGCGTGTGGCTTCTATGTATGTCATTCTTATTGGTGAAAGCATGGCTTCTGTGTCCATCAGTTCTATTGGAGGATATTATCCCAAAATGTCAATTTCGCAACCCGTGGAACACAGTGGACCTTGTGTACCCAAACACACATGGCTCATATGCTCCACCTCGGCTGCTCAGGCCAGTATTGTGGGCCGTGTACATCTGCTGTGTCAGggttagataaaaaaaattgctgcaaTCGTTGGTGAAACTTCCCTGAAAGGAATAATCCCTAATGGAGACACCGGAAGTGTAATTGCTTCAACCACAGACGAGACCATCTCAAGATCCATAGTATTTGTCATGTCCTCTTCAACAAACCCTGCTGGCTTGGTGATCTTCAGCATCCATTCCCTCCAAACTGTGGGTCTTTTTTGGATGGGAAATAGCTCTCAAACTCCGCTGAGAGTGCACACAGaggcctgtacgtgtaaccttggactgaatttgctgggacgcccactcctgggaagattcgGAACTGTCTTGAATGCTCTccaaacaatccttctcactgcagaatggtgaatttcaaattgttggGAGAtagccttataacccttcccagattgacgagcagcaacaattgcttctctgaggtcatggctgctgtcttttcttcttgatatgatgtagacacacacctccAATGCTCCAATAATTGCAAGTTCCGCTTTTATATAGGTAgtcacttttctttttcacttcttgatgattaactgaTCTTGTGGATTACATTAGTAACAACTttctgctaattactctctttaTGATTGTGAAAGTAGGAATGATGTACTAATTTTTTCCtgcctggtttctgaatgttggtttactttttcgggaaaaaaatgactgtttataaaatactgtatctaatgtgtttctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439294 lncRNA downstream 2515 5342755 ~ 5343080 (-) True G370853
TU439284 lncRNA downstream 95499 5249832 ~ 5250096 (-) True G370845
TU439276 lncRNA downstream 105319 5240065 ~ 5240276 (-) True G370837
TU439275 lncRNA downstream 107583 5236722 ~ 5238012 (-) True G370836
XR_003403756.2 lncRNA downstream 153948 5190347 ~ 5191647 (-) True LOC113537335
TU439334 lncRNA upstream 23756 5388904 ~ 5394769 (-) True LOC113537294
TU439337 lncRNA upstream 24182 5389330 ~ 5394769 (-) False LOC113537294
TU439338 lncRNA upstream 24475 5389623 ~ 5394769 (-) False LOC113537294
TU439333 lncRNA upstream 24674 5389822 ~ 5394769 (-) False LOC113537294
TU439335 lncRNA upstream 24674 5389822 ~ 5395012 (-) False LOC113537294
XM_026931789.2 mRNA downstream 5074 5331920 ~ 5340521 (-) True LOC113537353
XM_026931790.2 mRNA downstream 5079 5331920 ~ 5340516 (-) False LOC113537353
XM_026931938.2 mRNA downstream 29400 5305078 ~ 5316195 (-) True LOC113537467
XM_026931939.2 mRNA downstream 47422 5288685 ~ 5298173 (-) False LOC113537467
XM_026931936.2 mRNA downstream 68503 5269510 ~ 5277092 (-) True LOC113537466
XM_026931711.2 mRNA upstream 24650 5389798 ~ 5394812 (-) False LOC113537294
XM_026932107.2 mRNA upstream 44463 5409611 ~ 5412773 (-) True urp2
XM_026931627.2 mRNA upstream 164844 5529992 ~ 5547031 (-) False LOC113537235
XM_026931631.2 mRNA upstream 169267 5534415 ~ 5547031 (-) False LOC113537235
XM_034300297.1 mRNA upstream 170137 5535285 ~ 5547032 (-) False LOC113537235
TU439054 other downstream 456214 4843329 ~ 4889381 (-) True G370658
XR_004577360.1 other downstream 820811 4524502 ~ 4524784 (-) True LOC117596183
XR_004577367.1 other downstream 882381 4463108 ~ 4463214 (-) True LOC117596198
XR_004577366.1 other downstream 884280 4461209 ~ 4461315 (-) True LOC117596197
XR_004577365.1 other downstream 886172 4459317 ~ 4459423 (-) True LOC117596196
XR_004577341.1 other upstream 169267 5534415 ~ 5547032 (-) False LOC113537235
XR_003403738.2 other upstream 169267 5534415 ~ 5547032 (-) False LOC113537235
XR_003403737.2 other upstream 169267 5534415 ~ 5547032 (-) False LOC113537235
XR_003403739.2 other upstream 169267 5534415 ~ 5547031 (-) False LOC113537235
XR_004577339.1 other upstream 169324 5534472 ~ 5547032 (-) False LOC113537235

Expression Profile