RNA id: XR_004577284.1


Basic Information

Item Value
RNA id XR_004577284.1
length 834
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id LOC117596119
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13829181 ~ 13830571 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTTTGGCTCAAGTTTGCGCGCAGGccacacaacacaaacaacaaacgCACCTGAGTGTGTTTCAGTAGGTGAAACATAAAAACTTGTATTCTAAACTGTAGTTGTAGAATATGCTACAAAAATCCGACAATAAAACAATGTGTGAATGGAACTCGAGTCAGaAAGGCGCAAAGCCTTGTGGGATATCAACCCATATGAAATCCAGCACAAATCACTTTCAAATGGGAGAGAGTGGAGAGGAAAAGCAGAGGATGGGAAGAGGCCGCCatcttgtggaaaaaaatggcGCCAACCAAATGTATTTTTCACCTCAGACTTTCCAAATTTCTTCCTGGATTCAGAAGACAAGATTCACAGTATTATTGTATAATTAACGTTATGCACAATGATTTAAATTGTACACATAGAGAATTTTTCTCTAAATGTAGACCTTGATCACAAAAACATAGCAAAATTACTGAGAGcgaaagaatatttaaaataaatgcaaacacatTTCTAGCCAtgcaatttattaaagaaaataataataataattctcagGAAACAACAATCATTGACCATATATGAATTCTCAAAAGTCTGGAACAAATGAATTTCCCAGGAATTGGACATATgagcatgtaaatgtaaatatttaaattaaattcattaaaaagtaCTTTATTTAGAAATTAGATTATGTAACGTTAAGATAAAAACTATCTttggtgtgtatttttgtatttatagaCAGGAAATCTGGGTTAGATAggcttttattacttgtttttCTAGCACAACACTAGAAACTAACTATATCTCTTTTAACATAGTTATAATGTATAGGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU444638 lncRNA downstream 308258 13520563 ~ 13520923 (-) True G375466
XR_004577351.1 lncRNA downstream 322048 13504304 ~ 13507133 (-) True LOC117596174
TU444627 lncRNA downstream 323616 13498643 ~ 13505565 (-) True G375455
TU444588 lncRNA downstream 412085 13416822 ~ 13417096 (-) True G375420
XR_003403790.2 lncRNA downstream 427756 13386832 ~ 13401425 (-) True LOC113537738
TU444799 lncRNA upstream 1897 13832468 ~ 13834980 (-) True G375614
TU444800 lncRNA upstream 5527 13836098 ~ 13836533 (-) True G375615
XR_004577299.1 lncRNA upstream 22505 13853076 ~ 13860774 (-) True LOC117596131
TU445042 lncRNA upstream 141765 13972336 ~ 13974094 (-) False klf5a
TU445091 lncRNA upstream 248393 14078964 ~ 14085441 (-) True G375864
XM_026931655.2 mRNA downstream 350923 13476472 ~ 13478258 (-) True cldng
XM_026931688.2 mRNA downstream 402027 13417325 ~ 13427154 (-) True creb1a
XM_026931689.2 mRNA downstream 402028 13417325 ~ 13427153 (-) False creb1a
XM_026931800.2 mRNA downstream 480347 13331029 ~ 13348834 (-) True cd99
XM_026931799.2 mRNA downstream 480355 13321263 ~ 13348826 (-) False cd99
XM_034300257.1 mRNA upstream 37117 13867688 ~ 13902247 (-) True lmo7b
XM_034300254.1 mRNA upstream 37117 13867688 ~ 13902245 (-) False lmo7b
XM_034300256.1 mRNA upstream 37117 13867688 ~ 13902245 (-) False lmo7b
XM_034300255.1 mRNA upstream 37117 13867688 ~ 13902245 (-) False lmo7b
XM_034300253.1 mRNA upstream 37117 13867688 ~ 13902245 (-) False lmo7b
TU444599 other downstream 389646 13439219 ~ 13439535 (-) True G375428
trnar-ucu_18 other downstream 501038 13328052 ~ 13328143 (-) True trnar-ucu_18
trnar-ucu_17 other downstream 503097 13325993 ~ 13326084 (-) True trnar-ucu_17
trnar-ucu_16 other downstream 503573 13325517 ~ 13325608 (-) True trnar-ucu_16
trnar-ucu_15 other downstream 505008 13324082 ~ 13324173 (-) True trnar-ucu_15
XR_004577357.1 other upstream 152174 13982745 ~ 14016085 (-) False pibf1
TU445045 other upstream 196723 14027294 ~ 14030879 (-) True G375826
XR_003403797.2 other upstream 207160 14037731 ~ 14037862 (-) True LOC113537775
XR_003403796.1 other upstream 207957 14038528 ~ 14038598 (-) True LOC113537774
XR_003403798.1 other upstream 208283 14038854 ~ 14038986 (-) True LOC113537776

Expression Profile