Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577311.1 |
| length | 346 |
| lncRNA type | inter_gene |
| GC content | 0.49 |
| exon number | 4 |
| gene id | LOC117596150 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 17701668 ~ 17702743 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0009799 | specification of symmetry | biological_process |
| GO:0021532 | neural tube patterning | biological_process |
| GO:0007498 | mesoderm development | biological_process |
| GO:0009855 | determination of bilateral symmetry | biological_process |
| GO:0009888 | tissue development | biological_process |
| GO:0021903 | rostrocaudal neural tube patterning | biological_process |
| GO:0048598 | embryonic morphogenesis | biological_process |
| GO:0007368 | determination of left/right symmetry | biological_process |
| GO:0007389 | pattern specification process | biological_process |
| GO:0030917 | midbrain-hindbrain boundary development | biological_process |
| GO:0009790 | embryo development | biological_process |
| GO:0061371 | determination of heart left/right asymmetry | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU447439 | lncRNA | upstream | 101734 | 17595088 ~ 17599934 (+) | True | G377652 |
| TU447431 | lncRNA | upstream | 116625 | 17574761 ~ 17585043 (+) | True | G377644 |
| TU447429 | lncRNA | upstream | 132201 | 17569060 ~ 17569467 (+) | False | LOC113526395 |
| TU447424 | lncRNA | upstream | 132698 | 17566806 ~ 17568970 (+) | False | LOC113526395 |
| TU447382 | lncRNA | upstream | 273812 | 17415404 ~ 17427856 (+) | True | G377604 |
| TU447503 | lncRNA | downstream | 111788 | 17814531 ~ 17815106 (+) | True | G377703 |
| TU447520 | lncRNA | downstream | 182295 | 17885038 ~ 17887303 (+) | True | G377709 |
| TU447530 | lncRNA | downstream | 235524 | 17938267 ~ 17942279 (+) | True | G377715 |
| TU447552 | lncRNA | downstream | 254503 | 17957246 ~ 17957480 (+) | True | G377723 |
| TU447558 | lncRNA | downstream | 264475 | 17967218 ~ 17968950 (+) | True | G377727 |
| XM_034299908.1 | mRNA | upstream | 17539 | 17657678 ~ 17684129 (+) | True | LOC113525128 |
| XM_034300103.1 | mRNA | upstream | 88794 | 17588633 ~ 17612874 (+) | True | dnm2b |
| XM_034300104.1 | mRNA | upstream | 88794 | 17588633 ~ 17612874 (+) | False | dnm2b |
| XM_034299907.1 | mRNA | upstream | 132436 | 17561445 ~ 17569232 (+) | True | LOC113526395 |
| XM_026913797.2 | mRNA | upstream | 143615 | 17552000 ~ 17558053 (+) | True | tmed1b |
| XM_026911584.2 | mRNA | downstream | 10628 | 17713371 ~ 17723802 (+) | True | pin1 |
| XM_026911582.2 | mRNA | downstream | 23190 | 17725933 ~ 17728564 (+) | True | LOC113525124 |
| XM_034300132.1 | mRNA | downstream | 35372 | 17738115 ~ 17740854 (+) | True | LOC117596147 |
| XM_034300129.1 | mRNA | downstream | 35598 | 17738341 ~ 17757199 (+) | False | LOC117596144 |
| XM_034300134.1 | mRNA | downstream | 43589 | 17746332 ~ 17751161 (+) | True | LOC113525113 |
| XR_004577315.1 | other | upstream | 846652 | 16822550 ~ 16855016 (+) | False | b3gntl1 |
| TU446960 | other | upstream | 1137152 | 16561383 ~ 16564516 (+) | True | G377269 |
| TU446758 | other | upstream | 1357044 | 16340768 ~ 16344624 (+) | False | G377132 |
| XR_004577301.1 | other | upstream | 1385283 | 16290730 ~ 16316385 (+) | False | LOC113537689 |
| TU447578 | other | downstream | 352881 | 18055624 ~ 18056805 (+) | True | G377747 |
| TU447579 | other | downstream | 359675 | 18062418 ~ 18068946 (+) | True | G377748 |
| TU447580 | other | downstream | 359675 | 18062418 ~ 18068946 (+) | False | G377748 |
| TU447581 | other | downstream | 359675 | 18062418 ~ 18068946 (+) | False | G377748 |
| trnak-uuu_20 | other | downstream | 416922 | 18119665 ~ 18119737 (+) | True | trnak-uuu_20 |
