Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577320.1 |
| length | 533 |
| lncRNA type | inter_gene |
| GC content | 0.39 |
| exon number | 3 |
| gene id | LOC117596157 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 3039174 ~ 3052202 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU438470 | lncRNA | downstream | 54244 | 2949421 ~ 2984930 (-) | False | G370127 |
| TU438468 | lncRNA | downstream | 54244 | 2964268 ~ 2984930 (-) | True | G370127 |
| XR_004577338.1 | lncRNA | downstream | 185963 | 2846380 ~ 2853211 (-) | False | LOC117596167 |
| XR_004577337.1 | lncRNA | downstream | 185966 | 2846380 ~ 2853208 (-) | False | LOC117596167 |
| TU438334 | lncRNA | downstream | 217860 | 2818603 ~ 2821314 (-) | True | G370019 |
| TU438554 | lncRNA | upstream | 17796 | 3069998 ~ 3072601 (-) | True | G370207 |
| TU438584 | lncRNA | upstream | 122942 | 3175144 ~ 3176945 (-) | True | G370237 |
| TU438619 | lncRNA | upstream | 172818 | 3225020 ~ 3225235 (-) | True | G370272 |
| TU438629 | lncRNA | upstream | 177747 | 3229949 ~ 3230185 (-) | True | G370282 |
| TU438655 | lncRNA | upstream | 413445 | 3465647 ~ 3465861 (-) | True | G370308 |
| XM_034300420.1 | mRNA | downstream | 147089 | 2874908 ~ 2892085 (-) | True | LOC117596192 |
| XM_026928791.2 | mRNA | downstream | 200385 | 2833613 ~ 2838789 (-) | True | LOC113535482 |
| XM_026928792.2 | mRNA | downstream | 211574 | 2823993 ~ 2827600 (-) | True | LOC113535483 |
| XM_034300419.1 | mRNA | downstream | 227565 | 2808317 ~ 2811609 (-) | True | LOC113535756 |
| XM_026928789.2 | mRNA | downstream | 235045 | 2797268 ~ 2804129 (-) | True | LOC113535480 |
| XM_026928711.2 | mRNA | upstream | 30868 | 3083070 ~ 3170485 (-) | True | gpc5a |
| XM_034299954.1 | mRNA | upstream | 559517 | 3611719 ~ 3618120 (-) | True | LOC113535432 |
| XM_026928713.2 | mRNA | upstream | 559517 | 3611719 ~ 3616892 (-) | False | LOC113535432 |
| XM_034300309.1 | mRNA | upstream | 1435947 | 4488149 ~ 4504739 (-) | True | LOC113535753 |
| XM_026928684.2 | mRNA | upstream | 1459068 | 4511270 ~ 4517988 (-) | True | cnpy3 |
| TU438365 | other | downstream | 185963 | 2843212 ~ 2853211 (-) | True | LOC117596167 |
| XR_003403632.2 | other | downstream | 464703 | 2566757 ~ 2574471 (-) | False | LOC113535702 |
| TU437816 | other | downstream | 1243950 | 1792187 ~ 1795224 (-) | True | G369586 |
| XR_004577318.1 | other | downstream | 1439430 | 1541362 ~ 1599744 (-) | False | nrp2a |
| TU437448 | other | downstream | 1762361 | 1276021 ~ 1276813 (-) | True | G369242 |
| XR_003403643.2 | other | upstream | 1405233 | 4457435 ~ 4457541 (-) | True | LOC113535829 |
| XR_004577365.1 | other | upstream | 1407115 | 4459317 ~ 4459423 (-) | True | LOC117596196 |
| XR_004577366.1 | other | upstream | 1409007 | 4461209 ~ 4461315 (-) | True | LOC117596197 |
| XR_004577367.1 | other | upstream | 1410906 | 4463108 ~ 4463214 (-) | True | LOC117596198 |
| XR_004577360.1 | other | upstream | 1472300 | 4524502 ~ 4524784 (-) | True | LOC117596183 |
