RNA id: XR_004577342.1


Basic Information

Item Value
RNA id XR_004577342.1
length 1056
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id LOC117596170
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5510716 ~ 5518380 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTCGCCCCCGGTGCTACGCCACTGCGGTTGCATTCGTTTTGCGCAGACTTCACCCAGTGCTGCGCAGATTCGCTGATACTCTAGAGCTGTCCCGTATGACGTGTCGATCACTGGAGCTGCGTAAATGCTGCGTTGATTGAACGCACCCGTtgggtgtttttcttttttccttttttgtttgtttttttggaagaGCGGAAATCCCGACAAACGCAAAGTCTCTTCTGATGCACAATAAAAGACTCCCAATTTACAGACTAGAACACGGAAAACGTTTgAACCCAGCTGAGATGACAGGAGATGGGAATTGTTGAGGCAGACGAGTTTGCAGAGGTTAGAGCCCTGGCTATTGATTCTGCTGGCTGTCAGTGCTGATGCGGGAAAGAAGCGTCCACTTGATGAATGGTGTGTAATTGATAGtccCTACGATCCAATAAATGCTCGCCGATAGCCTGCAGACTTCCAGACAGAAGGGGAAGGCGAGCCATCAGAGAGGAAGCAAATTACGCACAGCGGCCAAAGCGAGCGTTTCAGGCTGTTTCAAGTGGAGCCAGACTGCGGCGCAATGCCAAGTCTCCCCCCCGAATCCCTACGGCCTCTTCCAGAAGCCCCCCTCTCTTCTCCCTCCACCTCCCCAGGCCTAGTGCTTATGCTATGGGCCAAGAGTCACACATGGCTGGGTGGGTGGCTTCAGGCGTCTTTGTGCATCCGGTGCAGGCAAAGCTCATTCATGTTTTACTGGACTCCCACATACACGCACATGTGGATACGAAGTGTGGAGGGAGCAGAATGAAGAGTGAACATGGGTGAAAGCGCACATGCCCATACTCTTACTCCAagactacacacagacagaagtgTAACACACAAATGTTTGGGCCATTTTGTGCACATTTGAATACAATAGAAAAAATGCTAGAAGTGGACAGTTTTGATTTTATTGAGCGTTCCATCAGCATGTCGATGTTGAAACCACAGAGATGTTGGGAAGTGGGTTTGTAGGTTATTGCATTAACAATAAACAAGTGCATTTCAAATGGATTTACCCTCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439411 lncRNA downstream 2347 5508102 ~ 5508369 (-) True G370942
TU439410 lncRNA downstream 4399 5506112 ~ 5506317 (-) True G370941
XR_003403776.2 lncRNA downstream 81284 5415626 ~ 5429432 (-) False LOC113537576
XR_004577293.1 lncRNA downstream 81284 5415721 ~ 5429432 (-) True LOC113537576
TU439335 lncRNA downstream 115704 5389822 ~ 5395012 (-) False LOC113537294
TU439645 lncRNA upstream 362096 5880476 ~ 5885612 (-) True G371117
XR_004577356.1 lncRNA upstream 368466 5886846 ~ 5891797 (-) True LOC117596178
TU439651 lncRNA upstream 373946 5892326 ~ 5895688 (-) True G371121
TU439680 lncRNA upstream 475109 5993489 ~ 5994747 (-) True G371147
TU439686 lncRNA upstream 479623 5998003 ~ 5998159 (-) True G371152
XM_026932107.2 mRNA downstream 97943 5409611 ~ 5412773 (-) True urp2
XM_026931711.2 mRNA downstream 115904 5389798 ~ 5394812 (-) False LOC113537294
XM_026931789.2 mRNA downstream 170195 5331920 ~ 5340521 (-) True LOC113537353
XM_026931790.2 mRNA downstream 170200 5331920 ~ 5340516 (-) False LOC113537353
XM_026931938.2 mRNA downstream 194521 5305078 ~ 5316195 (-) True LOC113537467
XM_026931627.2 mRNA upstream 11612 5529992 ~ 5547031 (-) False LOC113537235
XM_026931631.2 mRNA upstream 16035 5534415 ~ 5547031 (-) False LOC113537235
XM_034300297.1 mRNA upstream 16905 5535285 ~ 5547032 (-) False LOC113537235
XM_026931629.2 mRNA upstream 16905 5535285 ~ 5547032 (-) False LOC113537235
XM_026931628.2 mRNA upstream 16905 5535285 ~ 5547032 (-) True LOC113537235
TU439054 other downstream 621335 4843329 ~ 4889381 (-) True G370658
XR_004577360.1 other downstream 985932 4524502 ~ 4524784 (-) True LOC117596183
XR_004577367.1 other downstream 1047502 4463108 ~ 4463214 (-) True LOC117596198
XR_004577366.1 other downstream 1049401 4461209 ~ 4461315 (-) True LOC117596197
XR_004577365.1 other downstream 1051293 4459317 ~ 4459423 (-) True LOC117596196
XR_004577341.1 other upstream 16035 5534415 ~ 5547032 (-) False LOC113537235
XR_003403738.2 other upstream 16035 5534415 ~ 5547032 (-) False LOC113537235
XR_003403737.2 other upstream 16035 5534415 ~ 5547032 (-) False LOC113537235
XR_003403739.2 other upstream 16035 5534415 ~ 5547031 (-) False LOC113537235
XR_004577339.1 other upstream 16092 5534472 ~ 5547032 (-) False LOC113537235

Expression Profile