Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577356.1 |
| length | 396 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 5 |
| gene id | LOC117596178 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047620.1 |
| NCBI id | CM018566.1 |
| chromosome length | 19313417 |
| location | 5886846 ~ 5891797 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU439645 | lncRNA | downstream | 1234 | 5880476 ~ 5885612 (-) | True | G371117 |
| XR_004577342.1 | lncRNA | downstream | 368466 | 5510716 ~ 5518380 (-) | True | LOC117596170 |
| TU439411 | lncRNA | downstream | 378477 | 5508102 ~ 5508369 (-) | True | G370942 |
| TU439410 | lncRNA | downstream | 380529 | 5506112 ~ 5506317 (-) | True | G370941 |
| XR_003403776.2 | lncRNA | downstream | 457414 | 5415626 ~ 5429432 (-) | False | LOC113537576 |
| TU439651 | lncRNA | upstream | 529 | 5892326 ~ 5895688 (-) | True | G371121 |
| TU439680 | lncRNA | upstream | 101692 | 5993489 ~ 5994747 (-) | True | G371147 |
| TU439686 | lncRNA | upstream | 106206 | 5998003 ~ 5998159 (-) | True | G371152 |
| TU439687 | lncRNA | upstream | 107051 | 5998848 ~ 5999474 (-) | True | G371153 |
| TU439665 | lncRNA | upstream | 109382 | 6001179 ~ 6001613 (-) | True | G371135 |
| XM_026931827.2 | mRNA | downstream | 290751 | 5589772 ~ 5596095 (-) | False | n6amt1 |
| XM_034300092.1 | mRNA | downstream | 290910 | 5589772 ~ 5595936 (-) | True | n6amt1 |
| XM_034300024.1 | mRNA | downstream | 329756 | 5549553 ~ 5557090 (-) | True | wu:fa56d06 |
| XM_034300297.1 | mRNA | downstream | 339814 | 5535285 ~ 5547032 (-) | False | LOC113537235 |
| XM_026931654.2 | mRNA | upstream | 4539 | 5896336 ~ 5908867 (-) | False | jam2a |
| XM_026931653.2 | mRNA | upstream | 4539 | 5896336 ~ 5908867 (-) | True | jam2a |
| XM_026931713.2 | mRNA | upstream | 22162 | 5913959 ~ 5920199 (-) | True | mrpl39 |
| XM_026932220.2 | mRNA | upstream | 50242 | 5942039 ~ 5952313 (-) | False | LOC113537623 |
| XM_034300324.1 | mRNA | upstream | 50242 | 5942039 ~ 5952113 (-) | True | LOC113537623 |
| XR_003403738.2 | other | downstream | 339814 | 5534415 ~ 5547032 (-) | False | LOC113537235 |
| XR_003403780.2 | other | upstream | 50632 | 5942429 ~ 5952313 (-) | False | LOC113537623 |
| XR_004577328.1 | other | upstream | 127890 | 6019687 ~ 6033393 (-) | False | tpp2 |
| XR_004577329.1 | other | upstream | 466842 | 6358639 ~ 6363203 (-) | False | LOC113537742 |
| XR_004577289.1 | other | upstream | 1167038 | 7058835 ~ 7068467 (-) | False | LOC113537271 |
| TU440391 | other | upstream | 1167038 | 7058835 ~ 7068531 (-) | True | LOC113537271 |
