RNA id: TU461723


Basic Information

Item Value
RNA id TU461723
length 845
lncRNA type sense_over
GC content 0.42
exon number 3
gene id G389438
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 402002 ~ 950407 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aataataataataataataatccatgtGCTACAGAATATATCCGATTCCCAGATGTGTAATAGCGTCACATTTCTGAGTtaaaaacatcatcatctgAAATGACAAATCTGTAGCACAGTACAGTCTGTGAGTGAAATGATGaatctgaagctgaagctgtgaTGCAGGTTTACTGTGTGCGGCTGGAGACGAGACGGTCAAACTGCAGGAAGTGGAAGGAACCACTATAACTCTCCATACTGGGATCACTGGAATTCAGAGTGATGCTCAGATTGTGTGGCTCTATGGACCTGAGAAAGCAGAGGAAATTATATTGAACAGTCAGGTGTTTAAAGGAGAAACAGAAATCAGTGAGAGATTTAAAGAGCGACTGCAGCTGGACAGAACCAGTGGAGCTTTAACCATCAGGAACATCAGCAGAAATGATTCtggagtttatttattacaagttCTTGCTGGACGTCTCACATCCAGGactttcagtgtcagtgtttatgCTCCAGTATCAACTCCAGTAATAAGAAATGAAAGAGGAAATGGAAGTGTGTCTTCCACAGAGCAGTGTTTCCTCCTGTGCACTGTGGAGAATGGAGAAGATGTGAAGTTATCCTGGTACAGAGGGAATGAGAGACTCAATATCACCAATAACACAGATCTCAGTGTTCCCCTCAATCTCCCACTTCAAATACAACTCCATGATAATAACACTAACACTTATATCTGTGTGTCTGCAAACCCTGTCAGCAATAAAACAACTTCTCTCAACATCGCACAGCTCTGTGATCATAACTCAGGACAAACTGATCGTTCCCGTTCACTGCTTCCTGTCCTGATATCTGCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577511.1 lncRNA upstream 9836 938666 ~ 939174 (+) True LOC117596382
TU461982 lncRNA upstream 154675 787521 ~ 794335 (+) True G389524
TU461961 lncRNA upstream 207704 736859 ~ 741306 (+) True G389515
TU461946 lncRNA upstream 217845 612303 ~ 731165 (+) True G389506
TU461943 lncRNA upstream 290272 604419 ~ 658738 (+) True G389505
TU462012 lncRNA downstream 30061 980423 ~ 998703 (+) True G389542
TU462264 lncRNA downstream 266367 1216729 ~ 1232853 (+) True G389707
TU462495 lncRNA downstream 681460 1631822 ~ 1632653 (+) False adra1d
TU462530 lncRNA downstream 737435 1687797 ~ 1692987 (+) True G389959
TU462539 lncRNA downstream 762678 1713040 ~ 1713242 (+) True G389967
XM_034301303.1 mRNA upstream 12611 931021 ~ 936399 (+) True LOC117596376
XM_034301290.1 mRNA upstream 23045 916769 ~ 925965 (+) True si:dkey-162b23.4
XM_034301292.1 mRNA upstream 23045 916769 ~ 925965 (+) False si:dkey-162b23.4
XM_034301291.1 mRNA upstream 23045 918127 ~ 925965 (+) False si:dkey-162b23.4
XM_034301305.1 mRNA upstream 32721 906885 ~ 916289 (+) False bdh2
XM_034301324.1 mRNA downstream 11332 961694 ~ 979326 (+) True suclg1
XM_026945346.2 mRNA downstream 365297 1315659 ~ 1320076 (+) True lrrtm1
XM_026945165.2 mRNA downstream 668935 1619297 ~ 1632772 (+) True adra1d
XM_026945308.2 mRNA downstream 764903 1715265 ~ 1750762 (+) True rnf24
XM_026945307.2 mRNA downstream 764905 1715267 ~ 1750762 (+) False rnf24
TU461720 other upstream 16892 402002 ~ 932118 (+) False G389438
TU461736 other upstream 16892 402002 ~ 932118 (+) False G389438
TU461737 other upstream 16892 512320 ~ 932118 (+) False G389438
TU461983 other upstream 143794 804360 ~ 805216 (+) True G389525
TU461981 other upstream 148444 790488 ~ 800566 (+) False G389524
TU465523 other downstream 5275995 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 5275995 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 5665597 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 5665597 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 5665597 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile