RNA id: TU461737


Basic Information

Item Value
RNA id TU461737
length 627
RNA type TUCP
GC content 0.43
exon number 4
gene id G389438
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 402002 ~ 950407 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGGCACTAAATCAAGTGCAGaccagaatttatttattttttttGCAAGAGCAGGTTACAGACTGAACAAGCTGACACAGGTGTTCCCCTTCAGTGGTTTGATGGAAGTGAGCCAGTAAAGACGTTACACTAACAGTAACGGAAGGTTGTGTAACTGCACTGCGCACAACATGCTTGACTGACACTGATGTTCGGGACCTCGGAGAAAAATGTAAAGCTGAGCAACGCTTACTATGGCTCATGAAAATGATTTAGCAGAAATCAGGACTCTCAGGACTCTTCTTCTCCTGCTGTGCTGTTTACTGTGTGCGGCTGGAGACGAGACGGTCAAACTGCAGGAAGTGGAAGGAACCACTATAACTCTCCATACTGGAATAACTGGAATTCAGAGTGATGCTCAGATTCTGTGGTCTTATGGACCTGAGAAAGCAGAGGAAATTATATTGATTAGTCCAGTATTTACAGAACAAAGAGAAATCAGTGAGAGATTTAAAGAGCGACTGCAGCTGGACAGAACCAGTGGAGCTTTAACCATCAGGAACATCAGCAGAAACCATTCtggagtttatttattacaagttCTTACTCCACGTCTCTCATCTAGGactttcagtgtcagtgtttatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU461762 lncRNA upstream 2589 444407 ~ 509731 (+) True G389441
TU461740 lncRNA upstream 11165 438504 ~ 501155 (+) True G389438
TU461760 lncRNA upstream 45511 424585 ~ 466809 (+) False G389440
TU461938 lncRNA upstream 66342 428491 ~ 445978 (+) True G389501
TU461939 lncRNA upstream 66342 428491 ~ 445978 (+) False G389501
XR_004577511.1 lncRNA downstream 6548 938666 ~ 939174 (+) True LOC117596382
TU461729 lncRNA downstream 6930 939048 ~ 950362 (+) False G389438
TU461721 lncRNA downstream 14002 946120 ~ 950362 (+) False G389438
TU461723 lncRNA downstream 16892 949010 ~ 950362 (+) False G389438
TU462012 lncRNA downstream 48305 980423 ~ 998703 (+) True G389542
XM_034301028.1 mRNA upstream 12766 461305 ~ 499554 (+) True LOC117596316
XM_034301297.1 mRNA upstream 28413 474115 ~ 483907 (+) True LOC117596373
XM_034301313.1 mRNA upstream 103764 405110 ~ 408556 (+) True LOC117596377
XM_034301027.1 mRNA upstream 162317 348396 ~ 350003 (+) True LOC117596315
XM_026910831.2 mRNA upstream 176261 333139 ~ 336059 (+) True LOC113524533
XM_034301032.1 mRNA downstream 9843 941961 ~ 950824 (+) True LOC113545722
XM_034301324.1 mRNA downstream 29576 961694 ~ 979326 (+) True suclg1
XM_026945346.2 mRNA downstream 383541 1315659 ~ 1320076 (+) True lrrtm1
XM_026945165.2 mRNA downstream 687179 1619297 ~ 1632772 (+) True adra1d
XM_026945308.2 mRNA downstream 783147 1715265 ~ 1750762 (+) True rnf24
TU461928 other upstream 163985 333502 ~ 348335 (+) False LOC113524533
XR_004577502.1 other upstream 183841 290979 ~ 328479 (+) False smu1b
trnak-uuu_21 other upstream 194666 317582 ~ 317654 (+) True trnak-uuu_21
XR_004577501.1 other upstream 201600 290979 ~ 310720 (+) False smu1b
TU461802 other upstream 338128 170557 ~ 174192 (+) False G389456
TU461743 other downstream 2811 934929 ~ 950407 (+) False G389438
TU465523 other downstream 5294239 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 5294239 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 5683841 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 5683841 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile