RNA id: TU461779


Basic Information

Item Value
RNA id TU461779
length 780
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G389450
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 47572 ~ 49620 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTAAATCAGGTTTGTTAGAAAGCAGCCTGTGATTAAACcttctttattaaaattagatttatttatgtatttatttatttattaaaagtacaGAACATTTCCTCACAGTAAACATTTCAGGTAAATAATTACCAACAGAACAGAAATccataaaagtataaaagattCATACAAcaaattatttcacatttttttcccagcaataagaaaagtgcaaaaagttttattaaaaaatcccAGAGTGAATCGTCACAGAAATATTTAACTTTATAAACACGTCCTTCAAACTTTTAGAACTACAGACAGTGTATATTAACCCGTCATCACCGTCACTCTAATCCCGTCACCCTGACCCCATGACTAACATCACACCGTCACTACAGTCACTCTAATCCAGTCACTACAGTCACTCTAATCCAGTCACTACCGTCGCCCCGTGACTAACGTCACCCTGACCCCGTCATTAACGTCACACAGTTCGTGCACAGTGCTGATGTGAAGAGTGTGTTTTATGAAATGGTGTGTGTTCAGcgtgtgttcagtgttttctcCCTCGTGtaaggtttgatgtgtgtgaCGGTGGAGTTgatgactggtgtgtgtgtgaactcgaCCACGCACTGACCCCGGGTGCAGGGACACACCTCCAGCTCCAGCAGCGTGATGTTATTGGGCGACTTGGTGCTGAGGAGAGACGCAGGAACGAACAGAGTGACCTGAGGACCACGTGACGGCCAATAACGACCCACGTTCACGCCGTTAATCCAAACCTGACCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU461865 lncRNA downstream 49594 99214 ~ 146586 (+) False G389456
TU461800 lncRNA downstream 100560 150180 ~ 181013 (+) True G389456
TU461811 lncRNA downstream 120937 170557 ~ 173094 (+) False G389456
TU461907 lncRNA downstream 260595 310215 ~ 328491 (+) False smu1b
TU461926 lncRNA downstream 289253 338873 ~ 346593 (+) True G389490
XM_034301259.1 mRNA upstream 17022 26668 ~ 30550 (+) True LOC117596365
XM_034301227.1 mRNA upstream 41616 4072 ~ 5956 (+) True LOC117596358
XM_026910821.2 mRNA downstream 11328 60948 ~ 67902 (+) True ccdc86
XM_034301264.1 mRNA downstream 19830 69450 ~ 74454 (+) True si:ch211-217k17.11
XM_034301263.1 mRNA downstream 19835 69455 ~ 70725 (+) False si:ch211-217k17.11
XM_034301262.1 mRNA downstream 62571 112191 ~ 114613 (+) True LOC117596367
XM_034301241.1 mRNA downstream 75496 125116 ~ 180742 (+) True LOC113524531
TU461802 other downstream 120937 170557 ~ 174192 (+) False G389456
XR_004577502.1 other downstream 241359 290979 ~ 328479 (+) False smu1b
XR_004577501.1 other downstream 241359 290979 ~ 310720 (+) False smu1b
trnak-uuu_21 other downstream 267962 317582 ~ 317654 (+) True trnak-uuu_21
TU461928 other downstream 283882 333502 ~ 348335 (+) False LOC113524533

Expression Profile