RNA id: TU461800


Basic Information

Item Value
RNA id TU461800
length 1172
lncRNA type sense_over
GC content 0.36
exon number 4
gene id G389456
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 99214 ~ 181013 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATTGCAGTAGCAATTTTCAACTTGGTCTTTAGAATCAGTGAAACCTTTGATGCAGCACTGGCCAATACCAGCTCTACACAGTTTGCAGCAAAAGCTTCAATTATCCGTACTCAGGTTGAACCATTGTACAAGAAAGCCTTTAAAAACTTCATCATcatgaaaattataaaattcTTGAATGGCTCTATTGTGACAGAAAGCAACCTATTCTTCAGTGCTAATGCCGCAAATGTTACTGCGGCCCAAGTGAAAAACACTCTTCTCGATGGACTTAAAAACTTGACTTTTACTGTTGATCCAAACTCCATCAACGTCACCCAGACTCTTGGGAATTCCATGCCACCAGTGATTGCCAGCTCACTTTCCGTGATATGGATGTCTCTTCTATCACTTCTGCTTTCAGTGGCATTGCACTTCTAGCTCTAGACCTGATCATACACAATAACTTAATGGTACTTATTTCTATTTAACGATCCGAATTCTTCTACTGaagcaaataaacacagactgttgttttttttctttcaccataAACAGTAACATGTAAGTCTGCTTTTTATTGAGAACTATTTAAGATAAAGGGAATATGGGGAGATACAGTTCATTCTtataaactatttatatttacatgagAAATACAAATATCTTGACTTGCTGAAACTGGGGATTTAATGAGGGTAGTGAGTTGCCTGAATATTTCTCCACATCTCAACAGTCTTTAAAAGAATTGTtgtctttcatttattaaatttaactcAATTGCAAAATTCTTTAAAACGTTGTGTACTtaacagtatatgtatataattgcTATACACTTAAACGTAAACCTACATATGACTTCTGTATAtcagtgtataaatattattaacatcATATGAAATAAAGCTTTGGATACcattctgttattattattattattattattattattattattattattattgttacatgAAATTCGGCGAACCTGTAGATCCCGTATGGGAATGGGGTGCTTTGGGAATTTGGGAATGATTGGACTGACGGCTGTGACGTAGCAATGCTGGGAAGCAGGTCACTGTTCCATAGGAAAGACTTCGCTCGAGGTCACGCAGGCCAAACCATAGGAGTCATGAAAGAGCAATGAAACTTGTTCGTTATGTAATGCATGGCGAATcgagcaacaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU461865 lncRNA upstream 3594 99214 ~ 146586 (+) False G389456
TU461779 lncRNA upstream 100560 47572 ~ 49620 (+) True G389450
TU461907 lncRNA downstream 129202 310215 ~ 328491 (+) False smu1b
TU461926 lncRNA downstream 157860 338873 ~ 346593 (+) True G389490
TU461929 lncRNA downstream 158587 339600 ~ 375948 (+) True G389492
TU461930 lncRNA downstream 167627 348640 ~ 350005 (+) False LOC117596315
TU461763 lncRNA downstream 171794 352807 ~ 374670 (+) True G389442
XM_034301261.1 mRNA upstream 2438 145825 ~ 147742 (+) True LOC117596366
XM_034301262.1 mRNA upstream 35567 112191 ~ 114613 (+) True LOC117596367
XM_034301264.1 mRNA upstream 75726 69450 ~ 74454 (+) True si:ch211-217k17.11
XM_034301263.1 mRNA upstream 79455 69455 ~ 70725 (+) False si:ch211-217k17.11
XM_026910821.2 mRNA upstream 82278 60948 ~ 67902 (+) True ccdc86
XM_026910787.2 mRNA downstream 103634 284647 ~ 289660 (+) True rps6
XM_026910783.2 mRNA downstream 109966 290979 ~ 306559 (+) True smu1b
XM_026910784.2 mRNA downstream 113503 294516 ~ 306559 (+) False smu1b
XM_026910831.2 mRNA downstream 152126 333139 ~ 336059 (+) True LOC113524533
XM_034301027.1 mRNA downstream 167383 348396 ~ 350003 (+) True LOC117596315
XR_004577502.1 other downstream 109966 290979 ~ 328479 (+) False smu1b
XR_004577501.1 other downstream 109966 290979 ~ 310720 (+) False smu1b
trnak-uuu_21 other downstream 136569 317582 ~ 317654 (+) True trnak-uuu_21
TU461928 other downstream 152489 333502 ~ 348335 (+) False LOC113524533
TU461720 other downstream 220989 402002 ~ 932118 (+) False G389438

Expression Profile