RNA id: TU461811


Basic Information

Item Value
RNA id TU461811
length 517
lncRNA type intronic
GC content 0.39
exon number 3
gene id G389456
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 99214 ~ 181013 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCTGGGTAAATATCCCAGTAACCTGCTCTGTATTTTATACTTCGACACTGCCACTGGACTGAGAACATTCACATCTGCTACCTGTGGACACAAGattatAAACAACACAATGGACCCGAGGCTGGTACTGGCTGTTTTGTGTATGATTTCTGCAAGTGCTCTGGCAGACACTCCAAGTAATCAGACTGCAGTGAATGTAACTTTACCAAACACTTCTGCAGTATTCAACTTGGTCTTTAGCATCAATGAAACCTTTGATGCAGCACTGGCCAATATCAGCTCTACACAGTTTGCAGCAAAAGCTTCAAGTATCCGTACTCAGGTAAGGTTTTATTGATAATGCTGCCAGTTACAGTTTAATTGATTCTTCTAAACAAGAGTATTTTTTGCCACCTGAACAATTCCATTTCCATATAAGACAACTCAGAGAACTCTTAACTTTTCTCTATGTGGCTTTCTGTAAGAACAGTATATGATCTGGACATTTCTGATGAATACTGTGAAgttaattacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU461865 lncRNA upstream 23971 99214 ~ 146586 (+) False G389456
TU461779 lncRNA upstream 120937 47572 ~ 49620 (+) True G389450
TU461907 lncRNA downstream 137121 310215 ~ 328491 (+) False smu1b
TU461926 lncRNA downstream 165779 338873 ~ 346593 (+) True G389490
TU461929 lncRNA downstream 166506 339600 ~ 375948 (+) True G389492
TU461930 lncRNA downstream 175546 348640 ~ 350005 (+) False LOC117596315
TU461763 lncRNA downstream 179713 352807 ~ 374670 (+) True G389442
XM_034301261.1 mRNA upstream 22815 145825 ~ 147742 (+) True LOC117596366
XM_034301262.1 mRNA upstream 55944 112191 ~ 114613 (+) True LOC117596367
XM_034301264.1 mRNA upstream 96103 69450 ~ 74454 (+) True si:ch211-217k17.11
XM_034301263.1 mRNA upstream 99832 69455 ~ 70725 (+) False si:ch211-217k17.11
XM_026910821.2 mRNA upstream 102655 60948 ~ 67902 (+) True ccdc86
XM_026910787.2 mRNA downstream 111553 284647 ~ 289660 (+) True rps6
XM_026910783.2 mRNA downstream 117885 290979 ~ 306559 (+) True smu1b
XM_026910784.2 mRNA downstream 121422 294516 ~ 306559 (+) False smu1b
XM_026910831.2 mRNA downstream 160045 333139 ~ 336059 (+) True LOC113524533
XM_034301027.1 mRNA downstream 175302 348396 ~ 350003 (+) True LOC117596315
XR_004577502.1 other downstream 117885 290979 ~ 328479 (+) False smu1b
XR_004577501.1 other downstream 117885 290979 ~ 310720 (+) False smu1b
trnak-uuu_21 other downstream 144488 317582 ~ 317654 (+) True trnak-uuu_21
TU461928 other downstream 160408 333502 ~ 348335 (+) False LOC113524533
TU461720 other downstream 228908 402002 ~ 932118 (+) False G389438

Expression Profile