Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU461935 |
| length | 649 |
| lncRNA type | inter_gene |
| GC content | 0.44 |
| exon number | 2 |
| gene id | G389498 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047622.1 |
| NCBI id | CM018568.1 |
| chromosome length | 15845479 |
| location | 403704 ~ 404420 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU461929 | lncRNA | upstream | 27756 | 339600 ~ 375948 (+) | True | G389492 |
| TU461763 | lncRNA | upstream | 29034 | 352807 ~ 374670 (+) | True | G389442 |
| TU461930 | lncRNA | upstream | 53699 | 348640 ~ 350005 (+) | False | LOC117596315 |
| TU461926 | lncRNA | upstream | 57111 | 338873 ~ 346593 (+) | True | G389490 |
| TU461907 | lncRNA | upstream | 75213 | 310215 ~ 328491 (+) | False | smu1b |
| TU461937 | lncRNA | downstream | 13664 | 418084 ~ 434111 (+) | True | G389500 |
| TU461760 | lncRNA | downstream | 20165 | 424585 ~ 466809 (+) | False | G389440 |
| TU461759 | lncRNA | downstream | 20745 | 425165 ~ 443824 (+) | True | G389440 |
| XR_004577509.1 | lncRNA | downstream | 23175 | 427595 ~ 428210 (+) | True | LOC117596380 |
| TU461938 | lncRNA | downstream | 24071 | 428491 ~ 445978 (+) | True | G389501 |
| XM_034301027.1 | mRNA | upstream | 53701 | 348396 ~ 350003 (+) | True | LOC117596315 |
| XM_026910831.2 | mRNA | upstream | 67645 | 333139 ~ 336059 (+) | True | LOC113524533 |
| XM_026910783.2 | mRNA | upstream | 97145 | 290979 ~ 306559 (+) | True | smu1b |
| XM_026910784.2 | mRNA | upstream | 97145 | 294516 ~ 306559 (+) | False | smu1b |
| XM_026910787.2 | mRNA | upstream | 114044 | 284647 ~ 289660 (+) | True | rps6 |
| XM_034301313.1 | mRNA | downstream | 690 | 405110 ~ 408556 (+) | True | LOC117596377 |
| XM_034301028.1 | mRNA | downstream | 56885 | 461305 ~ 499554 (+) | True | LOC117596316 |
| XM_034301297.1 | mRNA | downstream | 69695 | 474115 ~ 483907 (+) | True | LOC117596373 |
| XM_026945201.2 | mRNA | downstream | 108390 | 512810 ~ 517919 (+) | True | LOC113545724 |
| XM_034301029.1 | mRNA | downstream | 160417 | 564837 ~ 565963 (+) | True | LOC113545735 |
| TU461928 | other | upstream | 55369 | 333502 ~ 348335 (+) | False | LOC113524533 |
| XR_004577502.1 | other | upstream | 75225 | 290979 ~ 328479 (+) | False | smu1b |
| trnak-uuu_21 | other | upstream | 86050 | 317582 ~ 317654 (+) | True | trnak-uuu_21 |
| XR_004577501.1 | other | upstream | 92984 | 290979 ~ 310720 (+) | False | smu1b |
| TU461802 | other | upstream | 229512 | 170557 ~ 174192 (+) | False | G389456 |
| TU461737 | other | downstream | 107900 | 512320 ~ 932118 (+) | False | G389438 |
| TU461980 | other | downstream | 382956 | 787376 ~ 794335 (+) | False | G389524 |
| TU461975 | other | downstream | 386068 | 790488 ~ 797329 (+) | False | G389524 |
| TU461976 | other | downstream | 386068 | 790488 ~ 797329 (+) | False | G389524 |
| TU461981 | other | downstream | 386068 | 790488 ~ 800566 (+) | False | G389524 |
