RNA id: TU462540


Basic Information

Item Value
RNA id TU462540
length 3509
lncRNA type sense_over
GC content 0.41
exon number 1
gene id rnf24
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 1715265 ~ 1750762 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttagtgatgtATACAGAGCTACAGAATTGTGATCGGTTAAATTAATACAATGTGATTAAAGAAGGGACGACAGTTTTGCACAGTGCAGAAGGGCAACGGTAGGAAGTGGAGTCTTTCTCGAAGAAGATCCTTTAAATGGAAGCGGAAATAGCATTTGACATTTGGCTCCCTGCAGAAGGCGTATGAGCCATTCACGAATGCTCtggtgtagtgcactaggaagGCATCCTAGGTGGATGGAAGTAGCTCTTCTGGGCTGATCTGAGACCAGTTTTGTGGTCATATTATAGTTAAGGTTTTGTCTCAGTGCAGAAGAGGagtctctgattggctggaagatCTCAAGGCGTTGGCCAACCAGTTGTGAATAAGAAGTTCAACTATGGAGGAAAACATCATGATACAAACTTTCTGTCGCTCTGTTTGGTAGTCAGTCCTTTACCTGCAGCACGTCCAAACAAAACTAATCGAAAGGAAATGTCCTGGTTGCTTTCTTGCTGTTGTTTACGCACTGAGTTTTCTTACACTGGTCCAATCTCTGAACGTCCTTCCATTGTGTAAAAAGAGACAGTGTGTAAGTTGAATCAAATTAACCACCCcactcttttaaaaaaactcaTCCACACTGCGCTCAATTTATGTTTTGCCTCTGAAAAACTGTGTCCTGTTTTCAAACTACTGAATCAAATTCAGTATCAGAACACATTTGAGATTGAAGACTCTCGAGTTACACTAGATCCCTGAATTAAGAAGTGTGATTTGAAATGGTCACCTCGTCTCGATTGCCTGATTTTACAGATGTAAATTAACattcttctattttttaaatgaagactCACTCAGTATTTTAGTGATGAACAAAGTCGTAGTTGTTATGGTAACGTTTAACATGTAAATAGTtgagaaaaggacaaaaatcgATATCAAGATCATGTTGTGAGTGACAAACACTTAGCAagcacttagctagctagctgtttgTTTCAATTTGGagacatttccaaattgtatGTTGATAAATAGTCATAAATCCTGAAATGTTCTGAAACCATTTTCAGTCACAGGATTACTTTCACATGTACAGAATCAAATCAGCTAGCTCTTAGGAAAGGACTCGACTTGGAGCCTTGTGTCCCTGTGGATCATTTACGTAAAATTGTAACCTTTGTTGGTCTTTGCTCGGAAAGATGGCATATTTTTCCAGCGGAAGGAGAAGGCTCCAGTCAGGCACGTCGAACCAGACACACCCCCTACCCAACACTACAAACATAAAAACTACAACTCAAGTCAAGGCAGTCACATGATCATCCCAGAGGAACCCACATCCATGTTTATGGACAGTCCCGACTGTGGTGTGTACGCCCCAGAGCCAGAGCCAGCAGGGTTCTAGCATCGCTCAgcatgtctaaaaaaaaaagggttccaGCACTTTGTATCTGATACACAAAGAGCTGTAAATGCATTAAGCGCATTTCGCTGCAGCACTTCAGTCAGCAGGTTGCACCTTTATTGAATCTGCGCTCTGGTGCTTTCCCCATGGCTGCATTGTTCATGGTGTAAAGTGCTGCGTAGGGCACTTTCAATGGAGGTCAGAGGCTTTAAATAGATCTTGTGGGTTAAAATTTTATGAAAGCAGAAGCATTCTTTGTCGCAGTGGCAGTAGCGGTGAAAGCTTTGCTCATTTTAATGCCGTGTGTCCAATTCCAATCCCAAATCTAATGCTTTTTAGGAGAGCTGTTTGGAAAATCTTTCAAATTTGTCATTATTAATTCTCAATCATGGTATAAGGATGTACATTGTTTGATTGCGTCCAAATTTGACAAGAATGTAAGCTTATTTTACACACTAATCTCAATACTGGTGCATGTTCATTAATGGAGAACTTCTTCTCTTCCTTGTCTTAAAAGATTCGACTACAACCCTTAAATCATTACGACAAATGATCAGCTGTAAGGCCATGCAAAGATGTGCAAAGCCAAATCAAACTGGGacagaagaaataaaaggaGTCTTAAGTGTTCAAAACACAGAAAGTGATACCGATGTCTCCCGGCTGTGATATAATAACCTTTACGTAAAACTACGTCATCACGTCTTTAGCGTATCTGCGAGGGATGTTATGAAGAACGTTGAATTGAACTCCCCTGCTGTCTGTTAGAGTCTTGACACAGCAAGCCGACTGAAAAGCCATCGCTAAGCGTTTAGCCGACTGTTGCGTGTTGCGTACGTCATGTGTTTTGCATTGTTGGTACTTCTCGGATCTCGTTAACCCCAATTTCAGCCAGTCTTAGCATGGATTCCTCTGAAGATCTGCGCAGAGCATGCTAACGTAGAATTCCAAGCTCTAGTGTTCAACAACCCACGGTTGTAGCAGTTACGACGTTGGTGATGCGTAACATACtttttagtacagtagtattcCTCTCGTGACATGACGTATGACATAACCGGAACGTTTTCTTTCACGCTTACGTAGACTGTCTGTGGTCGTCATTTGACGTCTTCACGATGTGTTTGAGCACAGTTTCATAAAAGACAGCAACTATAGGAGGAAGTTATTTGAGTTTTGCGTATAAACCCAGATTACTCAGTACTGCCCCCTTCTGGTTTTTCTGCATGCAGAAGCAGAACGTACTTGCATGTTGGTTGTCATTTGTCGTCTTTGTGGTACGTTCTAGGTCAACTTTGCGTGAAAGATGTGTGACAATAGAAGGCAGTTGTTAGTCTGTGTTCAAATTATTCGTATTATTACGAACGATAACTAATGATTACATGCATTCTTGGTTGTCTTCGCAAAAAACGTGAGAtgacagtgagacagaaggaGGCAGTTATTAGTGtatctttatattattatttgtattactATACAAACTACTGCCCCGTCCTGGTGTGGTCCTGGTTCCCTTTCACACAGATGCAGAACGTTTGTGCGTTTTTTGGTGTTCGTTTGGAGAAATTGGATGAAGTCACCCGCGTATCTTGGTTGATCCTCAGTGTTTGACGATGGCTTGTTGTGTCACGGCTCTTAGAAGCCACAAAGATCACTGAGATTTGATTTAAATGCCAAAGTGTCACCTGACGTTGGCCTCATCCTCATTCTGAAAGTACAAGTCTGAGGACTTTAATCTAGAGCGGAGTCGTCTTTAAATTGTTTGCGTAATTAATTGTCCAGATTGTAGACTCTGGCCTTGATATTGTGGAGTTCTTTCCTTCTCCCTGTCCCGTCCTGTCATAACCCTCATGGTTTGTGGTGTATGGTGTTTTCTAGCGTTCCACCTCCTCATGCTGTGTGTCTGACCGATTAACCCTTGCACTCACACACCTTCTCCCCTGTGTTTAACACTGATAATGTTTGTGACGCTCACAGACATGGTTGTAAAACTAAGAATTCTGCAGCAGAATATTTTTTTGGAGACATTCTTGCTTGTACAGTATTTGTAAGCtctatttttgtatatttaattgacattttggagaaaataaaaagagaaaaaagaaggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU462539 lncRNA upstream 33889 1713040 ~ 1713242 (+) True G389967
TU462530 lncRNA upstream 54144 1687797 ~ 1692987 (+) True G389959
TU462495 lncRNA upstream 114478 1631822 ~ 1632653 (+) False adra1d
TU462264 lncRNA upstream 514278 1216729 ~ 1232853 (+) True G389707
TU462012 lncRNA upstream 748428 980423 ~ 998703 (+) True G389542
TU462557 lncRNA downstream 4078 1754717 ~ 1760912 (+) True G389985
TU462593 lncRNA downstream 86125 1836764 ~ 1850574 (+) True G390019
TU462594 lncRNA downstream 91434 1842073 ~ 1854169 (+) True G390020
TU462598 lncRNA downstream 105851 1856490 ~ 1856901 (+) True G390023
TU462678 lncRNA downstream 193910 1944549 ~ 1945455 (+) True G390077
XM_026945165.2 mRNA upstream 114359 1619297 ~ 1632772 (+) True adra1d
XM_026945346.2 mRNA upstream 427055 1315659 ~ 1320076 (+) True lrrtm1
XM_034301324.1 mRNA upstream 767805 961694 ~ 979326 (+) True suclg1
XM_034301032.1 mRNA upstream 796307 941961 ~ 950824 (+) True LOC113545722
XM_034301303.1 mRNA upstream 810732 931021 ~ 936399 (+) True LOC117596376
XM_034301109.1 mRNA downstream 122677 1873316 ~ 2185917 (+) True LOC113545749
XM_034301121.1 mRNA downstream 122677 1873316 ~ 2185917 (+) False LOC113545749
XM_034301111.1 mRNA downstream 122677 1873316 ~ 2185917 (+) False LOC113545749
XM_034301113.1 mRNA downstream 122677 1873316 ~ 2185917 (+) False LOC113545749
XM_034301118.1 mRNA downstream 122677 1873316 ~ 2185917 (+) False LOC113545749
TU461743 other upstream 796724 934929 ~ 950407 (+) False G389438
TU461983 other upstream 941915 804360 ~ 805216 (+) True G389525
TU461981 other upstream 946565 790488 ~ 800566 (+) False G389524
TU465523 other downstream 4475718 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 4475718 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 4865320 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 4865320 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 4865320 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU248940 True 214 lncRNA 0.32 2 CI01000051 4151463 ~ 4151765 (+)
eurasian perch (Perca fluviatilis) TU11635 False 4990 TUCP 0.40 7 NC_053112.1 29306021 ~ 29339824 (-)
bowfin (Amia calva) TU112626 True 5229 lncRNA 0.36 2 CM030131.1 4385241 ~ 4390541 (+)
mexican tetra (Astyanax mexicanus) TU248940 True 12228 lncRNA 0.41 6 NC_035917.1 10261654 ~ 10317300 (+)