RNA id: TU462593


Basic Information

Item Value
RNA id TU462593
length 1236
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G390019
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 1836764 ~ 1850574 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTTAGCACAGAACATTCTCTGAGATAAATAATAGCACCCTTTGATTATAAGAATAAGAAACCTGCAGGGGTGTCAGTACTCTTCAGCCATGATGAGTACAGTCAGAGCTGACCAGCCTGTGAAAGGGTGGCTACCCTGTCCCTGACCAGTGCTGTCACTGTACTGTTCCCAGATATATCCAGTTTCATGGTactgtttgtaaatgttattgATGACATTAGTCCTGAGCTCTTGATAGAGATCAGCAGCCTTCTCCTGGTATGGTCCCTCTATACTGCTGTAATGATGCAGTGCCCTTAGTGCCAGGTAGTTGATGTTGATCCATATAGCACCACGCCAGTAAGGGGGATCATGCTCTGTATTGTGCTTCATATAAAGTGGAtctgaaagagaaagtgagcgCAAGCCATAGGGTGTCCACAAGCGAGCAGGATCCCGAATGTCTTTCAAAATGTGCTCTAATTTTTTAGAGTCAGGTGTCAGGACATGAAGCAAGAATGGAAACAGACTAACATAGCCAAATGCATTTACATACTGAAGCTTAGGGGCTTTGCGCACTGACCGCACCAGGCGTTTTACTGGTAACTGGTGCCTCATCTGTCCAGGTGGCACAACAACCTTTTCTTGCTGCAATGACACAGCGTGAGTGTGGTTACCGTAGTCGCAGAAGGCATGAAGCTGCTCGGACCAGTGCAGCTCACTCAGAAGGCTGTTGTTGCTGAGGGTCAGGTAGGTGCGCTCGTATTCCTGATGGGGTTCCCCAAGCAGTCGCGCCATGCCTGTCATGATCCGTGATGCAAGCACCATCCAACAGTGCAGATCCACATGTCTTTCATCTTCAGAAGGGTGTGATGCACGGGGGTAGTCGTCCAGCCCGGAAGTCAAGGTTTTAGGATTGAGGAAGAGGTTGGTGTCCTTGTCCCTGCCACGCCAACGGTAGGAGTTGGGCAAGGGTCCAGCTTGAGTGGTGTTATACCACTCAAACCACGTCTGCAGTCTGGGATACAGCCTTCGGAGGAAAGGCAGAGTATCCCGAAATTGTGGCGCATCCAGATGTGCCTCGAGCTGCTCCAAAAACTCCTCCAGGACTAGAAAGAATGTAGGTGGGTTTGCATTTTCAGTGTGCTGCACCACAAACTCTGAAGGGACCTTGCTGAGAGCCTCATCGCCCAGGATCTGTTCACGTGGGATCCAGCCCTCCACATTGATTAAGTCCAACCAGTGAGCAACAGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU462557 lncRNA upstream 75852 1754717 ~ 1760912 (+) True G389985
TU462540 lncRNA upstream 86125 1747131 ~ 1750639 (+) False rnf24
TU462539 lncRNA upstream 123522 1713040 ~ 1713242 (+) True G389967
TU462530 lncRNA upstream 143777 1687797 ~ 1692987 (+) True G389959
TU462495 lncRNA upstream 204111 1631822 ~ 1632653 (+) False adra1d
TU462598 lncRNA downstream 5916 1856490 ~ 1856901 (+) True G390023
TU462678 lncRNA downstream 93975 1944549 ~ 1945455 (+) True G390077
TU463037 lncRNA downstream 505759 2356333 ~ 2356794 (+) True G390411
TU463039 lncRNA downstream 513980 2364554 ~ 2368266 (+) False LOC113545784
TU463040 lncRNA downstream 513980 2364554 ~ 2368266 (+) False LOC113545784
XM_026945308.2 mRNA upstream 86002 1715265 ~ 1750762 (+) True rnf24
XM_026945307.2 mRNA upstream 86002 1715267 ~ 1750762 (+) False rnf24
XM_026945165.2 mRNA upstream 203992 1619297 ~ 1632772 (+) True adra1d
XM_026945346.2 mRNA upstream 516688 1315659 ~ 1320076 (+) True lrrtm1
XM_034301324.1 mRNA upstream 857438 961694 ~ 979326 (+) True suclg1
XM_034301109.1 mRNA downstream 22742 1873316 ~ 2185917 (+) True LOC113545749
XM_034301121.1 mRNA downstream 22742 1873316 ~ 2185917 (+) False LOC113545749
XM_034301111.1 mRNA downstream 22742 1873316 ~ 2185917 (+) False LOC113545749
XM_034301113.1 mRNA downstream 22742 1873316 ~ 2185917 (+) False LOC113545749
XM_034301118.1 mRNA downstream 22742 1873316 ~ 2185917 (+) False LOC113545749
TU461743 other upstream 886357 934929 ~ 950407 (+) False G389438
TU461983 other upstream 1031548 804360 ~ 805216 (+) True G389525
TU461981 other upstream 1036198 790488 ~ 800566 (+) False G389524
TU465523 other downstream 4375783 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 4375783 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 4765385 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 4765385 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 4765385 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile