RNA id: TU463039


Basic Information

Item Value
RNA id TU463039
length 1345
lncRNA type sense_over
GC content 0.43
exon number 4
gene id LOC113545784
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 2364554 ~ 2386867 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTTATTACTCAGTGAGGTGAAATGAAGACCAGAGCAGCGTGACTGGGTGGTGGAACATGTTTATTGACTACTGTACATCCTTTCACTTGTCCTCCGGCTTGTTGAAGCAGTAGGTGAGACAGCACTTGCCGCAGTAGTGCCTGTCGAAGTGGCTGGCCATGAAGACGCCGGCGCCGCACTCGTCAGCTGGGCACTCGCGACGGAGACGGTGGATCTTACCGTTCTCATCGACTTGTAGTACTTGAGCACAGCGAGCTTGACCTTCTTTCTCTTGTGCTTGTTCTTCTTGGGGGTGGTGTAAgacttcttcttcctcttcttagCACCACCACGCAGCCGCAGCACCAGGTGCAGGGTGGACTCCTTGGATGTTGTAGTCAGACAGGGTGCGTCCATCCTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTGGATttaaacaggaagaagaaaggaaaaaaaatcagtaagaTTTACACCTGTTCAACAAACAAGCAACAGTTACAGGGACGGATCTGGGGTGAGCCATGTGACGAAATATAACACTAAATCTAAAAACGTTTCTATGATATACAATAGCTAActgataattttttaaaaaaaaaatacaccttaGGAGAAAGAAGCTTGATATTTTTACACCATGTGTACGAgcagaaacactgaaaataaataaataaaatataaaattcaaGTCACATCATAGGCTGACTCAAATCTATAAGAAATacacttaaaaagaaagaaaaaaaaaatcaagagatAGACAATAGATCACGATATTGAGATTATAATCACATCACCCCAGCCCTAgtaaagagagagtgagtgtgtgtgtgtgtgtgtgtgtgtgttaccttctTTGTCTTGGATTTTGGCCTTGACATTTTCAATAGTATCCGAAGGCTCAACCTGCAGGTTATAGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTGCTGTTTAATCCACCTGCACACAAAACACGCAAAAACGTTTCCTCAGTATCAGGAATCAATAGCTGTATGACTTTGTGTACATTTtcaacttattttttaaatccaaaaccGGAGCTCAACTCACCACAAGCCTCTCGCTAATGGCGGATCATGAGAAGAGGGCTTTCAGAGCGCGCCACGGGGTTTTCTCCAGTCGCTTGCAGGGGCTAGGAGTCCATCGCGATGCCTGTTCAGAAAGAACCGTTATATAAATAACAGTTCGTTTGGAGTAACAGATGTTTAATTTTGAGGAATTTATTGAGATCaattcaaaatatattataactgttttatttcGTAGAGACTGTAGATAGGGCAGTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU463037 lncRNA upstream 7760 2356333 ~ 2356794 (+) True G390411
TU462678 lncRNA upstream 419099 1944549 ~ 1945455 (+) True G390077
TU462598 lncRNA upstream 507653 1856490 ~ 1856901 (+) True G390023
TU462594 lncRNA upstream 510385 1842073 ~ 1854169 (+) True G390020
TU462593 lncRNA upstream 513980 1836764 ~ 1850574 (+) True G390019
TU463087 lncRNA downstream 137799 2506065 ~ 2506498 (+) True G390456
XR_004577500.1 lncRNA downstream 768362 3136628 ~ 3171123 (+) True LOC117596362
TU463627 lncRNA downstream 1030915 3399181 ~ 3400825 (+) False LOC113545782
TU463846 lncRNA downstream 1032662 3400928 ~ 3401783 (+) True G391143
XR_003404650.2 lncRNA downstream 1780769 4149035 ~ 4175902 (+) False LOC113545714
XM_026945414.2 mRNA upstream 28667 2320342 ~ 2335887 (+) False LOC113545799
XM_026945415.2 mRNA upstream 28667 2320342 ~ 2335887 (+) False LOC113545799
XM_034301213.1 mRNA upstream 28667 2321182 ~ 2335887 (+) True LOC113545799
XM_034301212.1 mRNA upstream 28667 2321182 ~ 2335887 (+) False LOC113545799
XM_026945280.2 mRNA upstream 178637 2028305 ~ 2185917 (+) False LOC113545749
XM_026945386.2 mRNA downstream 20565 2388831 ~ 2413115 (+) True rtn4b
XM_034301230.1 mRNA downstream 20565 2388831 ~ 2413115 (+) False rtn4b
XM_026945387.2 mRNA downstream 20565 2388831 ~ 2413115 (+) False rtn4b
XM_026945388.2 mRNA downstream 20579 2388845 ~ 2413115 (+) False rtn4b
XM_026945389.2 mRNA downstream 20580 2388846 ~ 2413115 (+) False rtn4b
TU461743 other upstream 1414147 934929 ~ 950407 (+) False G389438
TU461983 other upstream 1559338 804360 ~ 805216 (+) True G389525
TU461981 other upstream 1563988 790488 ~ 800566 (+) False G389524
TU465523 other downstream 3858091 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 3858091 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 4247693 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 4247693 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 4247693 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile