RNA id: TU463087


Basic Information

Item Value
RNA id TU463087
length 340
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G390456
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 2506065 ~ 2506498 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTGACTACTGGTGTAGAGGTCACTGTCGCCCCCTTGGCCGAGGAGCCGTTCGGACTGGCGGGGGACGCGGACGGCGCCGGTTTGTCGTTGTTTCCGTTGGCGGCGGCTGCAGAATGCGAGAAGGTGAACTTAAAGCCGCCGGACTGCGTCCGCTTCGGGAGGTTCTCTTTGTCCTCGCTTTCTTTAACTTTTTTTGGCCCCCATAAACTTTCCGTAGCTTTCCGGAAAGTCTTCCTCAACTCTCTTCTCGACCCCTGCGTCCGTCTCgtcttcgtcttcttcttcgTTGAACCAAATCTCTTCGTCGTCCTCGACAGACCGGGCATCACGGCGATATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU463039 lncRNA upstream 137799 2364554 ~ 2368266 (+) False LOC113545784
TU463040 lncRNA upstream 137799 2364554 ~ 2368266 (+) False LOC113545784
TU463037 lncRNA upstream 149271 2356333 ~ 2356794 (+) True G390411
TU462678 lncRNA upstream 560610 1944549 ~ 1945455 (+) True G390077
TU462598 lncRNA upstream 649164 1856490 ~ 1856901 (+) True G390023
XR_004577500.1 lncRNA downstream 630130 3136628 ~ 3171123 (+) True LOC117596362
TU463627 lncRNA downstream 892683 3399181 ~ 3400825 (+) False LOC113545782
TU463846 lncRNA downstream 894430 3400928 ~ 3401783 (+) True G391143
XR_003404650.2 lncRNA downstream 1642537 4149035 ~ 4175902 (+) False LOC113545714
XR_004577481.1 lncRNA downstream 1656145 4162643 ~ 4175902 (+) False LOC113545714
XM_026945363.2 mRNA upstream 67183 2432863 ~ 2438882 (+) True zgc:64201
XM_034301379.1 mRNA upstream 76075 2415080 ~ 2429990 (+) True ppp1r21
XM_026945386.2 mRNA upstream 92950 2388831 ~ 2413115 (+) True rtn4b
XM_034301230.1 mRNA upstream 92950 2388831 ~ 2413115 (+) False rtn4b
XM_026945387.2 mRNA upstream 92950 2388831 ~ 2413115 (+) False rtn4b
XM_034301144.1 mRNA downstream 786693 3293191 ~ 3333177 (+) True LOC113545751
XM_034301145.1 mRNA downstream 786693 3293191 ~ 3333177 (+) False LOC113545751
XM_034301147.1 mRNA downstream 786693 3293191 ~ 3333177 (+) False LOC113545751
XM_026945283.2 mRNA downstream 786693 3293191 ~ 3333177 (+) False LOC113545751
XM_026945286.2 mRNA downstream 786693 3293191 ~ 3333177 (+) False LOC113545751
TU461743 other upstream 1555658 934929 ~ 950407 (+) False G389438
TU461983 other upstream 1700849 804360 ~ 805216 (+) True G389525
TU461981 other upstream 1705499 790488 ~ 800566 (+) False G389524
TU465523 other downstream 3719859 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 3719859 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 4109461 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 4109461 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 4109461 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile