RNA id: TU463627


Basic Information

Item Value
RNA id TU463627
length 1645
lncRNA type sense_over
GC content 0.30
exon number 1
gene id LOC113545782
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 3359377 ~ 3400825 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGAAAATTGGGTAACACATCCTATGAagcccatattcataaatattcattgtGCTTATAATTTGTTATAAGCATTTAAATAAAGTCTAATAATGGCTCATAAGGCTGTAATGATATACTGTGAATAATTCCTTGATAATGTAATCATGTTAATGCAAGTGTCACTATTTATTAGAATGCCATTATAATATGCCATTTTATAataggaagaagagaagagacgtTTCCTGAGCACAGTAAGTCTAATGATATGTCGTGAAAATCACAGACTTGTGAAGTGAGCTACACTCAACATGTGTAAAGACAgagataaaattatttatttcataccGATCTTATTCAAATAACGTAGTAATATAGGTCGGCTTTGTTAACATGACATGtagaaaaagtgaaagtttgatactCTGCTATGTATTGATATTCAGCATATAGAAGGTGCAGGTAAATgctttttctgtgagactgggttgattaatttttaacatttttagcaCATCCTTCTACTTTGCagtattatttctattatttgttGCTAGGAAATTTCTACGCAGATTTGACTTCCTGTAGCCAGGCATGTAGGAAGTGGCAAATTCTGGACAGAAATTTTTGAGAAAATATTTAGGTTTAGGTTAGGCTATTGGAATGGAAAAAGACTGgttaagcattttttaaaaaatcacttaTGGAACAATTTAGAATAATTTtgtctaatattaataataatattaataataaaaataataaagattttttaaaatatatttttgattatGTTCACTGaaaaaatttcattcattttcaatttttgTTCCCTGTAACCCTTCTGATCCCTGGTTAtatcattataatattttttttataattgttaataaaaaGCAGTTCCTTTATAATTATGCCCAGGTCATTATGGGTTCTAAAGGATGTTCAGTACACCAGCACATGGTACATGGTGTTATAATGCATATTTAGACTTGCATTAAAACATGATTACTTATTAGAGCTTTCTAACATGCTTCCAAGCAATCATTACCAACCTACAGTGTATCATAAGCACATttctaatgatttataatataggcttcatagaaagtgttaccaaaaatGCGTTCCTTTACTCTAAAGGTGCTGAGATACTCAGAGCTCAATGTTAAGCCAGTTGTGTTTGCATTGTGAGTTGTTCGCCATTGACTGCAATATAGTTCGTGCTAAAACCTGAATAATGTACAGTTTAAAGCTTGTGAAAAAAATAAGTGCTCTGTACATATgctatgtagttttttttttccttttttttttgttggaatgATTATAGTAGCCTAAGTAGACATTTGAATGGATATTTTTAGGTATATAAATGggtttttatgtgtgtttaaaaatcatAAGATACAGAAAATCTTAATTCTCAGAACACTTCCATTAACTGAACCATGAATGTAGACAATCCAGTTGATACAGTCCTTAAAAAATGTGCTTCTTTAAATAGGAAAGTTAATGTATTTTTTGCCACGTCCTTGCTATTGTATTCCAAGTGCACTGCCATTatactaaatatgttaaatgtctttttggtgtttttttaatttttttagcatGCACTATGAACAGTTTTATACTACTCTATCCGTTTctttgtgtgcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577500.1 lncRNA upstream 228058 3136628 ~ 3171123 (+) True LOC117596362
TU463087 lncRNA upstream 892683 2506065 ~ 2506498 (+) True G390456
TU463039 lncRNA upstream 1030915 2364554 ~ 2368266 (+) False LOC113545784
TU463040 lncRNA upstream 1030915 2364554 ~ 2368266 (+) False LOC113545784
TU463037 lncRNA upstream 1042387 2356333 ~ 2356794 (+) True G390411
TU463846 lncRNA downstream 103 3400928 ~ 3401783 (+) True G391143
XR_003404650.2 lncRNA downstream 748210 4149035 ~ 4175902 (+) False LOC113545714
XR_004577481.1 lncRNA downstream 761818 4162643 ~ 4175902 (+) False LOC113545714
TU464077 lncRNA downstream 765621 4166446 ~ 4172011 (+) True LOC113545714
TU464117 lncRNA downstream 812419 4213244 ~ 4213828 (+) True G391386
XM_026945368.2 mRNA upstream 1737 3359377 ~ 3397444 (+) False LOC113545782
XM_034301316.1 mRNA upstream 1998 3359377 ~ 3397183 (+) False LOC113545782
XM_026945369.2 mRNA upstream 1998 3360596 ~ 3397183 (+) False LOC113545782
XM_034301144.1 mRNA upstream 66004 3293191 ~ 3333177 (+) True LOC113545751
XM_034301145.1 mRNA upstream 66004 3293191 ~ 3333177 (+) False LOC113545751
XM_026945170.2 mRNA downstream 155528 3556353 ~ 4144835 (+) False nrxn2b
XM_026945169.2 mRNA downstream 195329 3596154 ~ 4147068 (+) True nrxn2b
XM_034301108.1 mRNA downstream 195329 3596154 ~ 4147068 (+) False nrxn2b
XM_026945179.2 mRNA downstream 195329 3596154 ~ 4147068 (+) False nrxn2b
XM_026945174.2 mRNA downstream 195329 3596154 ~ 4147068 (+) False nrxn2b
TU461743 other upstream 2448774 934929 ~ 950407 (+) False G389438
TU461983 other upstream 2593965 804360 ~ 805216 (+) True G389525
TU461981 other upstream 2598615 790488 ~ 800566 (+) False G389524
TU465523 other downstream 2825532 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 2825532 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 3215134 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 3215134 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 3215134 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile