RNA id: TU464077


Basic Information

Item Value
RNA id TU464077
length 5514
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id LOC113545714
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 4149035 ~ 4175902 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tccACAGGTTAAAACATTACAAGAGGCAAAACACACTTGAGCACATTTGTAGATACATAAAAACATAGACTCTCTGAAACACCAAGTCATATAATGATTAGGCCCAGCCCAGTATGTCATTTCGCAATCACAAAAAAGGCAACGTCACAAAGCCCAGTGGAAATCAAACAATAGGAAGGATGGACAACATAAAATCTTATTCAGGTGCCACAAAATGGAATATCATAAAAGTCTAGtattaaaaagaatgaattaaacAAAAGCAAGCAGTATTCTCAGAAGAGCAAAAGTCCAAAAGCACTTGTATCCAtttgaagtgtttttgtttttttgtcttcttctgAGTCATTTACTAACAatagaatggagaaaaatataaaaaaaaaaaagttggtcaTCCAAAAAGTCAGTCTGTAATTGACTATGAATGATCGTTAAGTATGAGTTTGTAGATTAGACTGATTTGTCCCTTTGCAGCACCCATacatctccatcacacactccagtgacgtaaaatacaatacacaatgCATCCTGATGAGGACTCTGTCTCTGGCccattaaaatatctttaatccAGTGTCTGAAAGGCCTtaataaatataagtatatctctttttttaaaaaaaatctttttctctcacaggGGAGTTATGCACAGTACTAGTTACTCTGTCGAAGCTGATTGTGCTTAGCACAAAATACAGTTTAGCCTATTTACTGAGGAAGCAGATGGAACAGCATTAGCACACAGCATAAgcataaaacacatacacaattagTCTAATGATGTTATTTCCAATGCTAATTGCTATGTTTAAAACAACAGCCCAAGACACTCCCTCGACCTAAATGGCTTAGAAGCAGGTTACAAAGTTTCTTTGGCACAAGAAATGATAGTACATGATAAGTGTCTTCTGAACaactacatacagtatcttACAGATTAAATCCACCACTGACAAGTCGAAAGAggggaaataaaaaaactcGATGATAAAACAGCAGTTGAAAAAAAGAGGACATGGTGGTGCTGATAAATGAGAACTTGCTAATGATGGCTCATATGACAGTTATGATGAATGGCCGCTGGGCTTTCGGGCGTGAGCGCAGCTGTTCAGTGTGACCTAGAGATCCTGACTAGCATTCAAGAGTagccattttaaaaacagattccCAAGGCCGGATGATCAACTTGAGGATTAAACATTATCACTAAAACGAGCCCAGCAGATGCTGACTTTGGAAAATGCATGCAAAATCAAAGGCGATTCATGCTCATGTTCTAGAGACCACACCGAAATAATAGCTAGAGGATTCAGTGACTGGAAATAGCTGGTAtagaaattgtattttttgaaattgtaatttttgttaTATGCACAATTGGAAATTGTGCATATATTGTGTAAATTAAAgtaattgtgtgtatatatgtgtagtgGCCTGAGAAAACTATATACAGGCTTTCCTGAGGCTTCTCTTTAGCTTGTATCTCAACAAGAAGTAAAGGCCCAAcgttttaaaatctggttaccaccccaaaagtgaaaagggagaaaactacatttaaagatttcattctgactgcTTTTCTGACAGCCAGCCTGCAATCATAAACGGCACTGATTGGGTCCATAGCTATcaaacaacttgatcaaagcctgacattcacCGTGTGAGGAAATCATAATCATCTAGCAAGGTTTTAACATGCCAAGATAAGaataaaaagtcaataaaaacatttctacattgttttggtttcttaaagttgaggtgtcAAATCTgttataagggaaaaaaaaaaaactctgactaacaggatttttttttttttttgccagaattcagccacattgACACCTctcaggttttcccagactgccgcACATACAGCTTCATTAAGGAGAAAGGTAATTTAACCTCTGCCCCTCAGTCTGTCATGCTAACTTCTGGTTATCTTGTCTTCCTAGCTAGCTACAATTCCTAATATTAGAGTTTTGTCTAAACTTTCAGTATTGGCCAAATTTTGGAACATTTTAATACAGTTACACAGTCGATTACTGTTTTAAACAACAGtagagatgatttttttttcatgattcttGACCAGTTTCGATCTCTAGTTCAAGGCAGTAATAGGCACTGCACCCTTGTCACTGCTAAAGCTACCATAATGGCTAATTACCTCAAAGCCTTATTGATCTGGTATGTCATTGTAGCATATCTGTCAGACAGTGTGTGCTAAAGCTAGGCATTTCAGGAATAatcaattttctataagagTTGAGGATGGTGAAATATCAGTCTGGAGTCAAAAAAAGATATAGAATCCTGGTATAAATGTGCTGAGCACCATGAGGAATTAATGTAGGATTCAGAGATCTGAAATTtactataaaaggaaaaaaagacaattttctTGTTGGTGCTTCATACAAACCTACAATGTTGTTGGATAGAGAATGTATCCTAGATATAATGATAGAGGCCTTCAATATAACCTTAATATAAACAGTCCAATTTTGTTTGGTTGAATGACCACTCATCTTAGAAATGAAGACAAGAAACCAAAAACCAACCCTCACAATATCTATGGTAGTGAAATGGCCACAGTACTAACCCTTTAAAAACCCAAAGgcataaagtaaaaaaaaaaatgctgaaggaTCATTTTGAATAGGAGGTTTTGGAGGGCATAATGTCTATctcaagtttttaaaaaaaacaccatagtGTTAacccacagcgctgttgaattctcattgAGTCATTTTCtaaatcagcagctctgacagtagttatGAGCAAGCAGCCACAACGACTTGTATAGTGGACGctccactgatttttttaaaaaggtccTTACTAAgctttttaagcatttttgggaggagtctccagtgtcaattctttgtaaaagtcagaggaaAAGTTGTAATTAGATGATTTCTGATACAGGGATGTCTTCAGGGTAAAGCTTTGCTCATtcgaaaatgatcaacttcggggtgggaCCAGTAACATTTGCttattttgttttgcactggagctacaaaggGTAATGTAGCTAACTGCTTCAATTTGTCTCTAACTTCATCTAGTTCTTCAGTATTAGACTTGCTTTTGTTTAGTAAACTGGCTGccatgtatataaaaaaaaaaaattaacaaactgTCACAGCCAGAAGCTGTTATTTGACACAGGCAATCATATTGCTAAATTGGAATCACTTATTTTCTCATCATTTGGTCTCCTGCTGCCCTGCTAGGCTCCGCCTCCCAAAGTCTGAAAGTGACACATTGTCGTAATATGCCGTCTACTACAAACTATCccttctaattaaaaaaaaaatcaattactGGCCAAATTGTCATTTTAATCAagtatatgtattatgtatttatggaaatattttgGGTGAGACAGAGATCCATTATGTTTTAGTTACATCAGCCTCATAGCTCCATTGCAAAAGTAAAGAAGAGTACAAGCTTGGGTTTATGATGTTACTTTCCACCAGGCATGAAAATTCAGAAGTAGTCACTTTTTTAGTATTATGAACACTTTTCATCTCTCTGAGACTATGTAGCCTTTGACAGcaagcagctgtgacagtaagTTAACGCTGATGGTGTGGGATTTCTGCGTGCCTGTACGGATACAATTTTGCACAATGAATGCACTTTCTGTACTCTTTTTAGAACAGCAGTCAAAGCCTCCAGGGATCCTTTGGTGTTCCTAACAGATTTTTCTCCAGACTCGGATGAAGGCGTTGCAATTTCTGTGCTTGGATTGAAGCAGGATCGTAGCGCTGTTGATTACATGGtgccttggagataaagggccAATTTGGATTAGGTGTAACTGGATAGAAACGTTTGTAATTATCATTAGAAACTCTATGTGGTAAATGTGAGGATATATGTGTCATATAGGTTGAAGAGTTGGTTTAAGTCAAACCCTGTCATGCTGGGCTCGCATAGACATTTTGTAGATTACGTTATCAGAAATTTTAAGTACAGTACATGCACTTTATTCACAAGGGAGGTAGATGGCCTGCCTTATACATTGCTACACACGTTTCTCAGTAGTTTAAAAAACAAGGGCACCATCTCTTGTGGTTCGAATTAGGAGAAGCAAGTCTGGCCTAAGTAACTGAGCTGTGTTTCCTTTTCTGTAATATTCTCTGATCTTGTGCCGCCTTCATCAACTGAAAACCACTTAGTGGTTTAGTTGCAATGAAAACCATGCTGTGGTGGCATGTGCTGTAACTCAAGCCACTCAGGATGAAATCTATTAGCTACAGATTTCCAGTTCAATTAGTGGACAGTTCTTTGCTGTGAATATTTTGTCGAAAGAGCTGATGAGCTATAACAATCCCTCAAGCACTACTAACGTATGGAATTTGGGCCCTCAAAATTGTACACAGTTCTATATCTGTTAGCTTTTGCTCAGAAAATTAAGTGACGTTTTCTAAAGGGTGACTGATCCATTTTGAGGGAATTAACTTGGTATGCTAATGTACATTTTGCTACGAGTAGCTGTGACGAGTTGATGGTGATGCTATGTGGTGGCCTGAgctttttctcattctttgGTATGTGTATGGAATGATCAGCAAGTTTGTCTTGTTCTCCTTTGCAAGCTTTATCTACCAGACTTGAACAGTCGCTCcatgaaagagagaaatttaGATCCTGTCAACACTGTGTACTGAAATCAACAGCTTAACTGTTTATACAGACTCTACTCCGTGTGCAGAGAGAAGCAGACTTAAAGGAACCTTGCTGAACTCAAGACAGGCATATTAGAATTGGATCATCTAAAAATGCTTAAACAGCTGATGACAAAACCAAAGTCATAGCCATGGCATAACTCTTAACTACTCATTAGCTGAAACAGACATTGCCCTAATTGAGATAACCAACAGAAAAAGGCACTTAAAGTAATGCAATGCATATTCCATAAGTCACAATGCTAATAATGTCAGATCGAAAATGCTCTGGTTCTGGAAGACTCATAAATCTGGAATAGTGATCGATGTTGATTGAAGAAAATATGCCACATCATAAAATTTCAAATATCATGAGCTTCCTTTTTTCAAAGGCAAAACTTAGAATCCAACACTTGGATAGTCTGAAGCTTTTCAGAGGAACACAAACAACTCCAAAGCACCAAATACTGGGAGCAATTACTCCTTATGGGCTATGTTTTGTGTGAATTCGAACTGGTAAATGCGTGGCTTCCTTTAGAAGCTCAGAATATGTCGTCGCTTTGTTTCGTTGGCGACTTGAAGGGACTAAGACCCAGAGTCTTTCTCGGGAAAACTTTCTCTTTGGCAACACCTATGGGCTTGTTGACCCCTGCCCAACCCAGGTCTATGAATGGGGAGTCAGCAGGGTTCAATGGGGCAACCCTGAGAGAGAGGTTGGGACTCCCGTTGGTGGAACAAGGTGCAGAGCGGGAAATGGGAAAGGGGGCAGAGAAGGGATCAAATGGCGAAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU463846 lncRNA upstream 764663 3400928 ~ 3401783 (+) True G391143
TU463627 lncRNA upstream 765621 3399181 ~ 3400825 (+) False LOC113545782
XR_004577500.1 lncRNA upstream 995323 3136628 ~ 3171123 (+) True LOC117596362
TU463087 lncRNA upstream 1659948 2506065 ~ 2506498 (+) True G390456
TU463040 lncRNA upstream 1798180 2364554 ~ 2368266 (+) False LOC113545784
TU464117 lncRNA downstream 41233 4213244 ~ 4213828 (+) True G391386
XR_004577489.1 lncRNA downstream 273445 4445456 ~ 4459340 (+) True LOC117596354
TU464251 lncRNA downstream 291916 4463927 ~ 4479339 (+) False LOC113545745
TU464291 lncRNA downstream 531757 4703768 ~ 4705703 (+) True G391500
TU464304 lncRNA downstream 572910 4744921 ~ 4746529 (+) True G391512
XM_026945182.2 mRNA upstream 19378 3990261 ~ 4147068 (+) False nrxn2b
XM_026945183.2 mRNA upstream 19378 3990261 ~ 4147068 (+) False nrxn2b
XM_034301107.1 mRNA upstream 21611 3596154 ~ 4144835 (+) False nrxn2b
XM_026945404.2 mRNA downstream 45017 4217028 ~ 4219878 (+) False c28h11orf68
XM_026945405.2 mRNA downstream 45017 4217028 ~ 4219878 (+) False c28h11orf68
XM_034301362.1 mRNA downstream 45187 4217198 ~ 4219878 (+) False c28h11orf68
XM_026945410.2 mRNA downstream 45323 4217334 ~ 4219878 (+) False c28h11orf68
XM_026945411.2 mRNA downstream 45493 4217504 ~ 4219878 (+) False c28h11orf68
TU461743 other upstream 3216039 934929 ~ 950407 (+) False G389438
TU461983 other upstream 3361230 804360 ~ 805216 (+) True G389525
TU461981 other upstream 3365880 790488 ~ 800566 (+) False G389524
TU465523 other downstream 2054346 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 2054346 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 2443948 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 2443948 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 2443948 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile