RNA id: TU464372


Basic Information

Item Value
RNA id TU464372
length 4724
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G391574
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 5372041 ~ 5376797 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTGGCAAAACACACTCACGAGATCAGGTAACATTCCAACTTAATATCATACAGACAATGGAGAAAACAGTAATCAAAAAGAAACATGCCacaaccatgcacacacacacacacacacacacacacacacacacacaggatccACAGCTTCGTATGTCCAGCTCACACCTTCTGAGCACCTTCTTAGTAGGTCTGAAACGTAGCAGTGTAAAGGAAACTGACGCTATGATCGAATTTAAATCGAACTGGCTACTGAAGTAAAGCAGAATCAGAACAGCCAAACATAAATATGGAACTATATTCAGTTTAAAAacaccagaaaaaaataacagttagGTCTAATGCTGTCTTCAAATTCTCTTCGGAAGTTCgtgggtgtgtgttaagtgGTTTAGGCAGACAGAAACTTTGGtgctgcgattttttttttgtttgtatcatCAATGACAAGAAGTCAAAAGAACCGTCTGCTGTAGGTGTCACATTCATATTGGAGAGCGCCATTACTTTTTTGGTAATTGTCACACCCCCAACTCAGAAAGTCAGGGCTCATAGAAAAATTCCTGAATTGTGATTACGACACTGTGCTGGCGTTCAAGTGTGCTCACCTCGTAATTACGATATTTCTGACAGGACTTGAAGGCAGGATCTGACACTAAGTTGCTCTGGTGTAAAAGACACAggcacaaaggaaaaaaaatcaacatttatgtgtggcagcctgggaaaacccatcagatgtcgctgtggctgaattctgaaaACAAGCCAtaaactacattttttaaagaaaattgagGTTTTTCCACCAGTAATGCGCTTTGACTTCTCTAAGAAAAACTTaagattttttccccaaaacatcATCAAATTGCCCCTgggtgaatgtgtgaatgtgtgtgtgaaagatgcACTGCGATGGCCTACCATCCCAGACTAGTGTATCCAGGATCCACAGCGAGCCTGAGAataggataaagcgcttaccaAAGATCAGTGAATGAATATGTCATCATCGAAGGGcacttaaaaaatgtttaaatgaccaattgaaaagaaaaaataacaagaaatttaatCACAAGATGTTAATTATCAAGGTCAGAACTTTTCTTTCCCCACTGTAAAATTATAACTGTTTATAATTTGTCAATATGTTGTTTTTCCGTAAGTAGCTTTGGTTATAAACGTAGAGGTGAGCGGGGCATCTTTCAATGGAATtgagatttaatattttaaaatgcaggaATTTTACTTTTGGTTCAGATacatacaaaagagaaacatatttctttCTCACCTGTACTTTTCAGCACTATTTATAGTAGAAAAGGTCtctgaagggttttcccagaccgccacacatcactttctttattttttgtcatgGCCCTAAAATGGCAATTAACCCATAATTGTGTGTAGTTTTTGTCCTGATAGTGTTGCCTGTACttcagcatgtgtgtgcgtTCCTGAGCTGAAGCCTTTCTTGCAATATATTCATGTcatataattacagtaattaaagTTTCTGACttgtaaaaatcatttataacTTTGTTGAAGTTGTGATCATTAGAATTTTGGCACTGTCCACACTATTATAGATTAAAACTAATAATATTCTAGTCAGAGAAGGTAACGAGCTCTGGGTAGAATCTCAAAATCGTCACCTGATGATTACTTTACACAGCAGTGGTTAATGCTGAAACCTTTTAAATCCCTTTAATAAATAGCTTTTGTCTGAAAGATCACTACAATAATCCTAATTTCACTATaataaaacaagaagaaaaaaaggaaggcaTGTCACTATAGATGTAAGGACTTGACCTGAGGATCATACATCATCTGCACAGTGTACGTCTGCCTCTATATTTAGCATTAAGATATATCTTTTAATGTAGATGTTGTACATGCTAATTCTGGTTGACTCGCTGTCGTATTGGTGTGTGGATTATCTGGTAATTGAGTTGAGCAATTTTCAATACTGTGTCACaaggaagtgtttttatttggaTCATTTCACctcaaaaaagtaaaatttcaaTTATCACCACCTGGGTCTATGGATATTGACAGGAAAACACTTccctaaaaaataataataataatcttttcaCAGATGTGTTTCCCGGTGATGGTATAATGAATATTGTATATACTGTGGTGTAACTGATGATCTGCACATGTACACGTACTGTAAGTCTTTGGTTTTGAAATATATGATATGTACTATTATTAAACAGAAAGTCATCAGAGAAATCTTCATTCTGATTGTCTTTGGCAGCTGGAATGAAGCAggaaagtaaaaacattttgaaatcctcacacacccatacacataacacacactgaaaacattcaCCTGATTATAAAAATACTTCTGTATTTGTCTTCAAAAGGCCTAAAAATGTACAGCATCATCATTCTGATAACGTCATGCTTCAACTTGATCGCAGTTTGCTAATTATAATCAGTGTAAATAGCAACAACAATGATAATATAGGTTATACAGATAATATTGATTAATACACAACCACAGCATTTAAATGGAAGGAGTGACATATATTGCCTgcatcctgaacacacacaacctgACTGAGATCTGATCAGCCCTAGCATGGAGCTTTATGTTACGCTGCCAGCCAAAAGCCTAAACCTTGGCATTTTTCAAACCAGGGTATAAGTGTTTAATACTAAATGTTTAGTGAATCGAGAAATGcttattgtttaatgtttagtgACTcgagaaatgtttattattaaatgtttagtgactcgagaaatgtttattattaaatgtttagtggCTCGaggaatgtttattattaaatgtttagtgacttgagaaatgtttattattaaatgtttagtgactcgagaaatgtttattattaaatgtttagtgaCTCGaggaatgtttattattaaatgtttagtgactcaagaaatgtttattattaaatgtgtaatgatttgagaaatgtttattattaaatgtttagtgaCTTGAGAAATGTTTACTATTTAATGTTTAGTGActtgagaaatgtttattatttaatgtttaatgacttgagaaatgtttattattaaatgtgtaatgatttgagaaatgtttattgTTGAATATTTAGTGTTAAATGTTGGAACAATCTAGATCTAATCTGCTCAGAAAACCCCTAAATCTTTATGACTGTATATAGGAACTTTATGCATACCAcatatttctgtcttttatctATAGACTTTATGGTTTTACCCTCCAGGTGAGCCTGTCTTTACTAAACACTCATTCAGAGTCGCATTAGGATGTTAGGGCAAGCAGTTAATAATTTCCACACAGATTTAGCTTTCTGTATTTAACTGCTattatcattttgtttgagttgctgcaataatagtgattaaactgtTCCAAAAACCTTCGACTGGCAATGTAGGAGTGTGTTACATTTTCAAATCACAGTAATCGGAGTTAAGTATACAATATTATCACAATACTGTACTCTCACGCAGTGAACAGAATTTTTGGATTCCCTTCATTGACTCACGCATGCAATCTTTCTTTAAAACAGACAACAGCTGAAGGCAGAATGGCACAGAATGTAGACTGAATAGATGCACAAATGCTGCCTATATAGGAAGCCTCATCTGTAAAACTGGAACACAGCCATAGTGAAAATACTGTGCATTGATATACTGTGAAATATGATTGAATAtcaagaaagacaaagagagagagagagagagagagagagagatggagtgggATGGAGTgaatatagttatatagtatagtagtatagtagtGAATATAgtagaaggagagaaggaaagaaagattgTATAGTATACAATAacttatagtatatagtatgtTATAGTATACTATAacttatagtatatagtatgaTTGATTATGGGAACGTGCCTGGTCTTAGTgaatagtgagagagagagagagagagagagagagagagagagagagagagagagagagagcgatacaGGCCCATGTgcactccttccataaaagtgtCAGTGGTGTAACAGTAGAGAAAGGGGAGGGGGATGTGTGATGGAGGCAGAGCTGGTCTTGATTTGCTCTATAAACCCGGGGGGAAGAGTTGGTGACCTGGtggaacgagagagagagagagagagagagagagcccacAAGTCATTTCATACTATACATTCACACTTGCtcctttcctcctcttcttttctcatttgttGCTTTCTTATTCCTGCTATCCTGCGTTTGTGCTccctttttctccctctctcatgttgtctttccctctctttctccatttcttttctttcttccttcctttgtcttttttgtcttgCTCTCTCCCTTTATTTCCTTGTACATCATATTCTTCATCACATATTGTCCATCACATTCTTATCTCCATTCTGGTCCTACTTAAGAAAGTCAGAATCAGTACATTAGGAGTAGCAAAGAACCTCAAATGTGTCTCCTAAAGTGTGTGGGTGAGACGGGAAGTGTCCTTACCTGTGGTCCATGACTGAGGAAGGCGAGTCTGGAGGTCCCTGGTTTGGACTttgtgaaaagagagagagagagacagagagagaggaaggaagaaataaagaaagatcCATTAAAAGTCggagacagaaacagagttGGAGGGGGTAGCAGCTCAAGGCCATCCATGGCCACCATCACACATAAGGAACCTga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577518.1 lncRNA upstream 186384 5176090 ~ 5185657 (+) True LOC117596387
XR_004577517.1 lncRNA upstream 215334 5096248 ~ 5156707 (+) True LOC117596386
XR_004577463.1 lncRNA upstream 297635 4864296 ~ 5074406 (+) True LOC117596306
TU464420 lncRNA downstream 27724 5404521 ~ 5404752 (+) True G391612
TU464377 lncRNA downstream 109679 5486476 ~ 5489315 (+) True G391576
TU464378 lncRNA downstream 109679 5486476 ~ 5489315 (+) False G391576
TU464379 lncRNA downstream 109679 5486476 ~ 5489315 (+) False G391576
TU464380 lncRNA downstream 109679 5486476 ~ 5489315 (+) False G391576
XM_026945385.2 mRNA upstream 2543 5367444 ~ 5369498 (+) True LOC113545788
XM_026945370.2 mRNA upstream 140602 5187559 ~ 5231439 (+) True LOC113545783
XM_026945168.2 mRNA upstream 293132 5074892 ~ 5078909 (+) True LOC113545709
XM_026945253.2 mRNA upstream 515067 4484089 ~ 4856974 (+) False LOC113545745
XM_026945297.2 mRNA downstream 37093 5413890 ~ 5419090 (+) True LOC113545754
XM_026945293.2 mRNA downstream 51240 5428037 ~ 5436881 (+) False alpk1
XM_026945294.2 mRNA downstream 51242 5428039 ~ 5436881 (+) True alpk1
XM_034301088.1 mRNA downstream 52391 5429188 ~ 5436881 (+) False alpk1
XM_026945295.2 mRNA downstream 52391 5429188 ~ 5436881 (+) False alpk1
TU461743 other upstream 4421634 934929 ~ 950407 (+) False G389438
TU461983 other upstream 4566825 804360 ~ 805216 (+) True G389525
TU461981 other upstream 4571475 790488 ~ 800566 (+) False G389524
TU465523 other downstream 849560 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 849560 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 1239162 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 1239162 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 1239162 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile