RNA id: TU464377


Basic Information

Item Value
RNA id TU464377
length 2741
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G391576
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 5486476 ~ 5489315 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACCTGTAGTTGATCCAGAACTTGATGGCGTTTCTGATGTGTCTGCTGTAGTCACGGATGTGTCAATAACACCTGTTGATGGTCCCATTGTAGTACCTGAAGTTGATCCAGAAAATGTGTGACTAACATCAGTTGAAGATTCCAGTGTTGTTCGTggagttgttccagcagaagaacttggtgatgttgaagatgtgacagctgtggattctgttgtttcactaacactagttgaggttagcagtgtcgtttctgcagttgttccagcagaagaacttggtgatgttgtaGATGTGACAGCTgcggattctgttgtttcactaagactagttgaggtcggcagtgtcgtttctgcagttgttccagaagaagaacttggtgatgttgaagatgtgacagctgtggattctgatgtttctttaacactagttgaggttagcagtgtcgtttctgcggttgttccagcagaagaacttggtgatgttgaagatgtgacagctgtggatgctgttgtttcactaagactagtagaggttagcagtgtcgtttctgcagttgttccagcagaagaacttggtgatgttgaagatgtgacagctgtggattctgttgtttcactaagactagttgatgttagcagtgtcgtttctgcagttgttccagcagaagaacttggtgatgttgaagatgtgacagctgtggattctgttgtttcactaagactagttgaggttagcagtgtcgtttctgcggttgttccagcagaagaacttggtgatgttgaagatgtgacagctgtggattctgttgtttcactaagactagttgaggttaacagtgtcgtttctgcagttgttccagcagaagaacttggtgatgttgaagatgtgacagctgtggattctgttgtttcactaagactagttgaggttagcagtgtcgtttctgcagttgttccagcagaagaacttggtgatgttgaagatgtgacagctgtggattctgttgtttcactaacactagttgaggttagcagtgtcgtttctgcagttgttccagcagaagaacttggtgatgttgaagatgtgacagctgtggattctgttgtttcactaagactagttgaggttagcagtgtcgtttctgcggttgttccagcagaagaacttggtgatgttgaagatgtgacagctgcggattctgttgtttcactaagactagtcgagattagcagtgtcgtttctgcagttgttccagaagaagaacttggtgatgttgaagatgtgacagctgtggattctgatgtttctttaacactagttgaggttagcagtgtcgtttctgcggttgttccagcagaagaacttggtgatgttgaagatgtgacagctgtggatgctgttgtttcactaagactagtagaggttagcagtgtcgtttctgcagttgttccagcagaagaacttggtgatgttgaagatgtgacagctgcggattctgttgtttcactaacactagttgaggttagcagtgtcgtttctgcagttgttccagcagaagaacttggtgatgttgaagatgtgacagctgtggattctgttgtttcactaacactAGTTGAGGtcagcagtgtcgtttctgcggTTGtgccagcagaagaacttggtgatgttgaagatgtgacagctgtggattctgttgtttcgcTAACACTAGTTGAGGtcagcagtgtcgtttctgcagttgttccagcagaagaacttggtgaagttgaagatgtgacagctgtggatgctgttgtttcactaagactagttgaggttagcagtgtcgtttctgcagttgttccagcagaagaacttggtgatgttgaagatgtgacagctgtggattctgttgtttcactaagactagttgaggttaacagtgtcgtttctgcagttgttccagcagaagaacttggtgatgttgaagatgtgacagctgcggattctgttgtttcactaacactAGTTGAGGtcagcagtgtcgtttctgcggTTGtgccagcagaagaacttggtgatgttgaagatgtgacagctgtggatgctgttgtttcactaagactagtagaggttagcagtgtcgtttctgcagttgttccagcagaagaacttgatgatgttgaagatgtgacagctgcggattctgttgtttcactaacactagtagaggttagcagtgtcgtttctgcagttgttccagcagaagaacttggtgatgttgaagatgtgacagctgcggattctgttgtttcactaacactagttgaggttagcagtgtcgtttctgcagttgttccagcagaagaacttggtgatgttgaagatgtgacagctgcggattctgttgtttcactaacactagtagaggttagcagtgtcgtttctgcggttgttccagcagaagaacttggtgatgttgaagatgtgacagctgcggattctgttgtttcactaacactagttgaggttagcagtgtcgtttctgcagttgttccagcagaagaacttggtgatgttgaagatgtgacagctgcggattctgttgtttcactaacactagtagaggttagcagtgtcgtttctgcagttgttccagcagaagaacttggtgatatTGCAGATGTGACATCTGCAGTTGTTTCAGTGCTTGGTGATATTGTGGTTGTTTGTCCAAATGATATTTGTAGAATGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464420 lncRNA upstream 81724 5404521 ~ 5404752 (+) True G391612
TU464372 lncRNA upstream 109679 5372041 ~ 5376797 (+) True G391574
XR_004577518.1 lncRNA upstream 300819 5176090 ~ 5185657 (+) True LOC117596387
XR_004577517.1 lncRNA upstream 329769 5096248 ~ 5156707 (+) True LOC117596386
XR_004577465.1 lncRNA upstream 412070 5070934 ~ 5074406 (+) False LOC117596306
TU464390 lncRNA downstream 42523 5531838 ~ 5534270 (+) True G391585
TU464384 lncRNA downstream 45620 5534935 ~ 5536415 (+) True G391580
TU464467 lncRNA downstream 51849 5541164 ~ 5541456 (+) True G391643
TU464391 lncRNA downstream 52720 5542035 ~ 5542361 (+) True G391586
XR_004577525.1 lncRNA downstream 159019 5648334 ~ 5649863 (+) True LOC117596392
XM_026945167.2 mRNA upstream 43751 5437417 ~ 5442725 (+) True epdl1
XM_026945293.2 mRNA upstream 49595 5428037 ~ 5436881 (+) False alpk1
XM_026945294.2 mRNA upstream 49595 5428039 ~ 5436881 (+) True alpk1
XM_034301088.1 mRNA upstream 49595 5429188 ~ 5436881 (+) False alpk1
XM_026945295.2 mRNA upstream 49595 5429188 ~ 5436881 (+) False alpk1
XM_034301335.1 mRNA downstream 100585 5589900 ~ 5593569 (+) True LOC113544404
XM_034301336.1 mRNA downstream 100585 5589900 ~ 5593569 (+) False LOC113544404
XM_026943206.2 mRNA downstream 117007 5606322 ~ 5611615 (+) True si:cabz01076231.1
XM_026943207.2 mRNA downstream 117615 5606930 ~ 5611615 (+) False si:cabz01076231.1
XM_026943219.2 mRNA downstream 269626 5758941 ~ 5773253 (+) True tmem154
TU461743 other upstream 4536069 934929 ~ 950407 (+) False G389438
TU461983 other upstream 4681260 804360 ~ 805216 (+) True G389525
TU461981 other upstream 4685910 790488 ~ 800566 (+) False G389524
TU465523 other downstream 737042 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 737042 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 1126644 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 1126644 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 1126644 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile