RNA id: TU464420


Basic Information

Item Value
RNA id TU464420
length 232
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G391612
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 5404521 ~ 5404752 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctcgCGCAAGGAGTTGTGGGTAATATTTGCTGAAAAAGTGTGCACTTCGAAAATGGTAGACCATCCAGGGACCTTTGGGAAACTCATTTCAATATACTACAACTTGGGACACGCTTATTCTAATCTCAGCATACCATTTAGGACGGATTGTAGGTGAATTGAGACACAGCATAGGACTCCAGACTATCACAGGCTTGAACCAGGGACACTGGCGTTGTGAGGCGGTGACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464372 lncRNA upstream 27724 5372041 ~ 5376797 (+) True G391574
XR_004577518.1 lncRNA upstream 218864 5176090 ~ 5185657 (+) True LOC117596387
XR_004577517.1 lncRNA upstream 247814 5096248 ~ 5156707 (+) True LOC117596386
XR_004577464.1 lncRNA upstream 330115 4864296 ~ 5074406 (+) False LOC117596306
TU464377 lncRNA downstream 81724 5486476 ~ 5489315 (+) True G391576
TU464378 lncRNA downstream 81724 5486476 ~ 5489315 (+) False G391576
TU464379 lncRNA downstream 81724 5486476 ~ 5489315 (+) False G391576
TU464380 lncRNA downstream 81724 5486476 ~ 5489315 (+) False G391576
TU464390 lncRNA downstream 127086 5531838 ~ 5534270 (+) True G391585
XM_026945385.2 mRNA upstream 35023 5367444 ~ 5369498 (+) True LOC113545788
XM_026945370.2 mRNA upstream 173082 5187559 ~ 5231439 (+) True LOC113545783
XM_026945168.2 mRNA upstream 325612 5074892 ~ 5078909 (+) True LOC113545709
XM_026945222.2 mRNA upstream 547547 4604256 ~ 4856974 (+) False LOC113545745
XM_026945297.2 mRNA downstream 9138 5413890 ~ 5419090 (+) True LOC113545754
XM_026945293.2 mRNA downstream 23285 5428037 ~ 5436881 (+) False alpk1
XM_026945294.2 mRNA downstream 23287 5428039 ~ 5436881 (+) True alpk1
XM_034301088.1 mRNA downstream 24436 5429188 ~ 5436881 (+) False alpk1
XM_026945295.2 mRNA downstream 24436 5429188 ~ 5436881 (+) False alpk1
TU461743 other upstream 4454114 934929 ~ 950407 (+) False G389438
TU461983 other upstream 4599305 804360 ~ 805216 (+) True G389525
TU461981 other upstream 4603955 790488 ~ 800566 (+) False G389524
TU465523 other downstream 821605 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 821605 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 1211207 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 1211207 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 1211207 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile