RNA id: TU464504


Basic Information

Item Value
RNA id TU464504
length 240
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G391671
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 5683382 ~ 5683621 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTGACCTCTTACAACCTGCACCTTCCCCACAGAGGTGCCGGGAGGAGAATCCTCAGACACTGAGAAGCTGTAGTGAGCTTTTTGGAAGAGCACAGGGGCGTGGTCAGTATTCAgaatgttgatgatgatgtcagcAGGTCTCggagaggccacacccactccATCATGGGCGGAGACAGTGAGTCGCACACTGCTGGTGCCCAGCTCAGAGAGAGTGGAGGAGACAGAAAGTGTACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464500 lncRNA upstream 659 5681730 ~ 5682723 (+) True G391670
TU464499 lncRNA upstream 2694 5680449 ~ 5680688 (+) True G391669
TU464498 lncRNA upstream 4191 5678367 ~ 5679191 (+) True G391668
TU464497 lncRNA upstream 5684 5677463 ~ 5677698 (+) True G391667
TU464496 lncRNA upstream 7451 5675032 ~ 5675931 (+) True G391666
TU464505 lncRNA downstream 177 5683798 ~ 5684017 (+) True G391672
TU464507 lncRNA downstream 2788 5686409 ~ 5687116 (+) True G391674
TU464506 lncRNA downstream 5729 5689350 ~ 5690399 (+) True G391673
TU465441 lncRNA downstream 82280 5765901 ~ 5766205 (+) True G392541
TU465463 lncRNA downstream 130583 5814204 ~ 5815071 (+) True G392559
XM_026943206.2 mRNA upstream 71767 5606322 ~ 5611615 (+) True si:cabz01076231.1
XM_026943207.2 mRNA upstream 71767 5606930 ~ 5611615 (+) False si:cabz01076231.1
XM_034301335.1 mRNA upstream 89813 5589900 ~ 5593569 (+) True LOC113544404
XM_034301336.1 mRNA upstream 89813 5589900 ~ 5593569 (+) False LOC113544404
XM_026945167.2 mRNA upstream 240657 5437417 ~ 5442725 (+) True epdl1
XM_026943219.2 mRNA downstream 75320 5758941 ~ 5773253 (+) True tmem154
XM_026943222.2 mRNA downstream 75320 5758941 ~ 5773253 (+) False tmem154
XM_026943223.2 mRNA downstream 75321 5758942 ~ 5773253 (+) False tmem154
XM_026943218.2 mRNA downstream 75323 5758944 ~ 5773253 (+) False tmem154
XM_026943220.2 mRNA downstream 75324 5758945 ~ 5773253 (+) False tmem154
TU461743 other upstream 4732975 934929 ~ 950407 (+) False G389438
TU461983 other upstream 4878166 804360 ~ 805216 (+) True G389525
TU461981 other upstream 4882816 790488 ~ 800566 (+) False G389524
TU465523 other downstream 542736 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 542736 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 932338 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 932338 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 932338 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile