RNA id: TU464505


Basic Information

Item Value
RNA id TU464505
length 220
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G391672
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 5683798 ~ 5684017 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCGttcacagagaaaaaagaggcgtGGTCTCCGGGGAGAAGCTCATATGAGATTCGTCCGTAGATATCCAAGTCTCGGTCAGTGGCAAAGACAGTGAGGATTTCAGCTCCTGGCTGAATGTTTCTACTTAAATTTATGATGTATTTCTCTGGGTTAAATACAGGAGCATTATCATTCACATCCTCTACATCGATGTGAAGATACGTCTGTGAGCTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464504 lncRNA upstream 177 5683382 ~ 5683621 (+) True G391671
TU464500 lncRNA upstream 1075 5681730 ~ 5682723 (+) True G391670
TU464499 lncRNA upstream 3110 5680449 ~ 5680688 (+) True G391669
TU464498 lncRNA upstream 4607 5678367 ~ 5679191 (+) True G391668
TU464497 lncRNA upstream 6100 5677463 ~ 5677698 (+) True G391667
TU464507 lncRNA downstream 2392 5686409 ~ 5687116 (+) True G391674
TU464506 lncRNA downstream 5333 5689350 ~ 5690399 (+) True G391673
TU465441 lncRNA downstream 81884 5765901 ~ 5766205 (+) True G392541
TU465463 lncRNA downstream 130187 5814204 ~ 5815071 (+) True G392559
TU465450 lncRNA downstream 147527 5831544 ~ 5856234 (+) False LOC113544283
XM_026943206.2 mRNA upstream 72183 5606322 ~ 5611615 (+) True si:cabz01076231.1
XM_026943207.2 mRNA upstream 72183 5606930 ~ 5611615 (+) False si:cabz01076231.1
XM_034301335.1 mRNA upstream 90229 5589900 ~ 5593569 (+) True LOC113544404
XM_034301336.1 mRNA upstream 90229 5589900 ~ 5593569 (+) False LOC113544404
XM_026945167.2 mRNA upstream 241073 5437417 ~ 5442725 (+) True epdl1
XM_026943219.2 mRNA downstream 74924 5758941 ~ 5773253 (+) True tmem154
XM_026943222.2 mRNA downstream 74924 5758941 ~ 5773253 (+) False tmem154
XM_026943223.2 mRNA downstream 74925 5758942 ~ 5773253 (+) False tmem154
XM_026943218.2 mRNA downstream 74927 5758944 ~ 5773253 (+) False tmem154
XM_026943220.2 mRNA downstream 74928 5758945 ~ 5773253 (+) False tmem154
TU461743 other upstream 4733391 934929 ~ 950407 (+) False G389438
TU461983 other upstream 4878582 804360 ~ 805216 (+) True G389525
TU461981 other upstream 4883232 790488 ~ 800566 (+) False G389524
TU465523 other downstream 542340 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 542340 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 931942 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 931942 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 931942 6615959 ~ 6618682 (+) False LOC113544406