RNA id: XM_034301182.1


Basic Information

Item Value
RNA id XM_034301182.1
length 4480
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC113544283
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 5831544 ~ 5910592 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCTCTAAGGTACTTGAGTTGGCACTGGTTGACGGTATATTTGGGATAGCCCTTGGGTTGTCAAAGTCATCGTCAAGAAGATCCAGGGACTCATTTCTAGCCCTCGGTATCATCTAAATCAGTCTTTCATATCATCTAAGTGTTATTTTTAAGATTGTTATAAGACAAGGGCTACAGACTCTTTCCTTTACTTCTTCGGGATATGAGTTTCTAGTTCCCCGGACTATTTGGTGATGGTCCGGCATTGCCCCTTCCCATGCTTTTCATCCGCCTGCAActgcaagaagaagaaaatgcccAAATCCTTGCCCAAGGAGAAGGCTCCCCAGACTCTACCAGAGAGCCTGGCACTGGAGCTTTTGGACCCCAAGGAAGTGGCCAGGGAGCCTTCACAGAAAGTGTTGAAGATATTCAGCATTAATATCATCACACAGGGCCTGCCTTTCTGCCACAGACGGATGAAGAGGAAGTTGGATCATGGACCCGAAGTTCGGCCGTTCCCTTCAGGCAAAAAGCCCTGTCCGAGTCCGACGGGTTTGGTCCCGTATCCATCCACTCCCACTACATTTGGCGACTTGAGAGCTGCTAATGGACAGGGACAGCAGAGACGCCGCATCACCTCCATCCAGCCTCCGACAGGCTTACAGGAATGGCTCCGTACcttccagagttggAGCGGGCCAGAGAAGCTCTTGGCGCTGGATGAGTTGATTGACAGCTGCGAGCCGACGCAGGTGAAGCACATGATGCAGGTGATCGAGCCGCAGTTCCAGAGAGACTTCATCTCCCTACTGCCCaaagagTTGGCTCTGTATGTTCTGTCCTTCTTGGAGCCGAAGGATTTGCTCCAGGCCGCTCAGACGTGTCGATACTGGCGAATCCAGGAAGACAACCTGCTCTGGAGAGAAAAATGCAGAGAAGAAGgtatCGACGAGCCGTTACACATCAAGAGGAGGAAGGTGGTGAAGCCGGGGTTCAGTCACAGCCCGTGGAAGAGCGCTTACATCAGACAACACCGCATCGACACCAactggaggagaggagagatcaAGTCACctaagGTGTTGAAAGGACATGATGATCACGTCATCACGTGTCTGCAGTTTTGTGGGAATCGTATCGTTAGCGGTTCGGACGATAACACGCTCAAAGTGTGGTCTGCAGTCACGGGAAAGTGTTTGCGGACGTTAGTTGGGCACACAGGCGGAGTTTGGTCCTCTCAGATGAGagacaacatcatcatcagcgGCTCGACAGATCGAACTCTGAAAGTGTGGAACGCAGAGACGGGAGAATGTATTCACACGCTGTACGGACACACGTCCACTGTGCGCTGCATGCACCTCcacgaaaaCAGGGTGGTGAGTGGCTCTCGGGATGCGACGCTGCGTGTGTGGGATATCGACTCGGGTCAGTGTTTGCACGTGCTGATGGGTCACGTGGCGGCGGTGCGCTGCGTGCAGTACGACGGACGCCGAGTCGTCAGCGGAGCCTACGACTTCATGGTCAAAGTGTGGGACCCTGAGACCGAGACGTgcttacacacactgcagggaCACACCAACCGGGTCTACTcactacagTTTGACGGCGTCCACGTGGTCAGCGGTTCTTTAGACACGTCCATCCGCGTGTGGGACGTCGAGACGGGgaactgcatacacacactcacgggTCATCAGTCCCTCACCAGCGGCATGGAGCTCAAAGACAACATCCTGGTGTCGGGGAACGCCGACTCGACCGTCAAAATCTGGGACATAAAGACGGGACAGTGTCTCCAAACGCTGCAAGGTCCTCATAAGCACCAGAGCGCCGTGACGTGTCTGCAGTTCAACAAGAACTTTGTGATCACGAGTTCGGACGACGGCACGGTGAAGCTGTGGGATTTGCGCTCGGGAGATTTCATCCGGAACCTGGTGAGCCTGGAGAGCGGCGGCAGCGGCGGAGTCGTGTGGAGGATCCGAGCCTCCAACGTGAAGCTGGTGTGCGCCGTGGGCAGCAGGAACGGCACCGAGGAGACCAAACTGCTCGTGCTCGACTTCGACGTCGAACTCAAGTGAACTGGACTTGAAgtgaagggagagaaagagcgGCGGGGCGAGGTCGGGGGGGTGTGGAAACGGGCCTCCTCGCGCAGCTCCGCCACTGGACCCACCACTGCTCACCGTTCCTGCCATGAATTGCCCCTTTAGTGACCGCTGCTGCGATTTATTTTTTGGGGGGAGGGAGGGGTTGTGCTTCTTCagaaagggggcggggcataGCTGATAGCGGGaaggaggaacaggaagtgagtcTCCTTGCGCAGCTCCGAGACTGGACCCATCATATAGAGGCATCACCTCCTCCATCTTTAGAAGGGGGTAGGGGCAGGAACGAGGAGGCGGGGCCTCTGCATTCTGGGAAGGAAGGCTTCCTCATGCAGCTCCATGACTGGCATCTGTTTGTCTGGTCCCTTTCTGGGGTTCTGTGCAGCAAAGCATTCTGGGAAGAAacgggatttttttttttttccttcactccCTTTCTCACAGCCTTTCTCGCTCAGAGACTTGCTGATTCAAGCCTGCACGCCCCAGACAGCATTATCTCTTTATTTTcgttctctttttttgttgtttgtttttgttttggttttttttcccttttaaacCAACACGAACAAGTCGACACTGTATGCATGACATGAGCGAGGAAGCCGAGTTGACACAGGTGATGGTGAACGATGATGAATGCACGCAGGTTTAGAGTTTTTAACAGgataaaaaaatggataaaagagctttgagttttaaatgtgaggatttaacaaaaaaaaaaaaccctacacacacaaaggacCCTCGATACGTGCGAGAGAGAGCCTGCTTTTCTCTGGCTTGTTCTTTCTTCTTGTTGTAtccccatcacacacacacacacacaattattagtGTTCAATGCACAACTGTGAATttaagtgtcattctttaattctttttttttccacaaacatCAGCGTTTGGTGTTCTTGTTGTGTTTCAGTTTCTCTCCACCATTACCTCTACGACGAGTCTCAGTATTAATTTAAAGACAGtctggcataaaaaaaaaaagatgtgtacACAATGTTCCTCTCATCCTGAATGTAGTCAATCAGACAAGACGTGCTAATATCGctaataaaaaaaggaagattAGCGCTGCTAGGTTAGCGTTGTGCAAACTGCATGTCTAACTCATCACATTTGCCTCAAAAGACATCGATCACacgatgctaaactggaggttACACGCTTCTCTTATTtattagccacattagcatGAGAAGACGCAAACTTCAGACATCAAACGTGGATTATATTTGGGTTAGAGGAGGAAAAtggtggactttttttttttgttttgttagatCTGTGTCTTTAAGTGCTGTTCCACATCCTCAGTGcagttttgtttctgttgtcGCTGTTCTCTGTTTAAGCTTCCTCATGTTGGCTCAGTACCGTTGCTTCATGGGAGATTAgaaattgatattttttttttttttttttttattttacttacaaGCCCcttggaagccccgccccttcctgttcctgttctccCAGTGGCCAAACTGAACTTAATGCTGCTAGTCACTCATgcgggactttttttttttcctccactggCTGTGACGTTTTAGTCCCAGACTAAATCCTAAAAGAATTTAGacttataaataaatcaacaaaagaCACACGATGCGTACAAGATATGAAATCtgacttctttttcttcttctttttttttttttttttgccactgaAACTTGAGCCAAATGTGCCTCTACGAGGCTGAAAGAGCGAGAAGGTCCGACGACTATGGACGATGtcgagtgtgtgcgtgtgtgtgcctgcttgtgtgtgcgcgtgtgtgtgtgtgtttgagcatcGTTCACACATTCCTTGGGACGGAAGTTCTGTTGGGGACGTGttggatggattttttttttctttgggttAGCGCATCGGATTGATGGAAAGTCGGACTCGCTCATCGTTCTTTCTGAAGAGGGGACAAAAAAAAGCGTCAACGTAGCCAAACCGTTCGTCTCATTCTCCGAGTCACACACTCACGCTGAACTGTGAAACTGGTTTAACACTGTATATTacgatttaaagaaaaaaaaaagaaacaagttcTTTCTCCAGTTTTTATTTATGGTCTGGTTTAAGAAAATCAGATAATGgaggtgtttttttccttttctttttctttcttttctttttttttccagtccaAACTGCCTGGTGtaacagacagataaaaaaatacagcaaaccTTAAAGGGATTGTctattagaatttttattttcttataacttaAGTGCAATAAAATGTGgggttgttattattgttttttttttccttttttgtttcatttcaagcttctttttttgtcactgtGTGAAAGTGTCATATGTGCCCAATAAAGCTTCTACGGTTTATTGTA

Function

GO: NA

KEGG:

id description
K10260 FBXW7, SEL10; F-box and WD-40 domain protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465463 lncRNA upstream 16912 5814204 ~ 5815071 (+) True G392559
TU465441 lncRNA upstream 65778 5765901 ~ 5766205 (+) True G392541
TU464506 lncRNA upstream 141584 5689350 ~ 5690399 (+) True G391673
TU464507 lncRNA upstream 144867 5686409 ~ 5687116 (+) True G391674
TU464505 lncRNA upstream 147966 5683798 ~ 5684017 (+) True G391672
TU465494 lncRNA downstream 56137 5966729 ~ 5969232 (+) True G392578
TU465488 lncRNA downstream 98430 6009022 ~ 6028337 (+) True G392575
TU465532 lncRNA downstream 259372 6169964 ~ 6213340 (+) True G392610
TU465571 lncRNA downstream 457735 6368327 ~ 6376260 (+) True G392644
TU465606 lncRNA downstream 567658 6478250 ~ 6480082 (+) True G392679
XM_026943219.2 mRNA upstream 58730 5758941 ~ 5773253 (+) True tmem154
XM_026943222.2 mRNA upstream 58730 5758941 ~ 5773253 (+) False tmem154
XM_026943223.2 mRNA upstream 58730 5758942 ~ 5773253 (+) False tmem154
XM_026943218.2 mRNA upstream 58730 5758944 ~ 5773253 (+) False tmem154
XM_026943220.2 mRNA upstream 58730 5758945 ~ 5773253 (+) False tmem154
XM_034301285.1 mRNA downstream 54892 5965484 ~ 5979895 (+) True gatb
XM_026942936.2 mRNA downstream 54892 5965484 ~ 5979895 (+) False gatb
XM_034301286.1 mRNA downstream 54892 5965484 ~ 5976746 (+) False gatb
XM_026943116.2 mRNA downstream 98671 6009263 ~ 6026147 (+) False sh3d19
XM_026943118.2 mRNA downstream 98671 6009263 ~ 6026147 (+) False sh3d19
TU461743 other upstream 4881576 934929 ~ 950407 (+) False G389438
TU461983 other upstream 5026767 804360 ~ 805216 (+) True G389525
TU461981 other upstream 5031417 790488 ~ 800566 (+) False G389524
TU465523 other downstream 315765 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 315765 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 705367 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 705367 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 705367 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile