RNA id: TU465466


Basic Information

Item Value
RNA id TU465466
length 3342
lncRNA type intronic
GC content 0.40
exon number 2
gene id G392562
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 5856294 ~ 5859687 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTAAGGAGCCAAACAGATTTGCATCAGAGTTGAAAACACTTTGGtggtgtgcagttataggaaaataatcagtgattgtgttggtgtgatgtggtctgacatgaagttactcttaccaccccaaaagttgattattttttatcaccacatgccaaagtgttttatttcctaacactaacatatttttctatttacaaCAGGACAACATTGtcctttttatccctttatagttacatttaatgttgtggaacttctgcaagcttcatttaatgttcaaaGCACATCAAAGCTCTGTGCTGAAGACTCtcttgtgtcagaaaacttaaaaaacagctttacctctgactgttacaaagtgctggcactggagactccttccaaaaatgttaaataaacgtctccttgcagaaagtaagctgttactatagaaacggatTAGAAGGAGGACATTAATGTATATAACAGctgacactactgtcagaactgctgttatagaaaatgaatcaaccaatcagaatcgagaacaCAACAGCGCTGTGATGTAAACACGAATACTTCCTCAGCAGCTTTAGCTCACCTCACTGCTTAACTGAGGAAGCTGAAAAAATCACAGTCCTGACTACCATACGGTTACTTACGCAGCTCTAATAAATCGACTCAGGTAGCGTTTCTCTCACAAAGTAGCGCTGAGTGATTCCAGCTTTCTCTGTGATGTTTGCTTTAATGCGTTAACGTACACCACACAGCGCCGTTCCTCCATCTGCTCTTCGTTAAAGCCGCACTCACTTCTGAGAAGCCGATCcttcagcaaacacacagcgAGAGAGTGCTGTAACGCTCCTGCTCTTTCATCTCCCGGCCTTCACATCAGGGCCGGGCCTTTGTTTATTCCAGTCACTGCTTTTCACTGGGTTCTGTTCCTGTTTGGCTAACGTTTGTGCTCGTAAGATAAAGTCACTCCCATGTGGAATGTCTGGCCCACACTTCTGTACAGGATTTATACACCGCTATCCAGTGTGATACTTCACGTATATGTAATGACTTTTGTTTATGTCCTGCATTGTCGTTCAGTCATTAACCTCCTCCCGCGTTACAGGATGTACCCAGAATCAAACAGTCCTGATCAATGATCCCGAATCTCAGAACCTGGGATTTTGACCACACTCAGGTCTTGTCGGTGATCCTCATGTTTCAGTAAAGTGATTTCGGATAGAAATTCTGACTCCGCTGTAACACCTAAAAGATTGTAttatgagaaagtgtgtgtgtgtgttttcagcacTTTGTGAGGACCAAAAAGGATTAAAAGTCCTCGTAAAGTTAGGCTTGAGTCAACTGTCCTCACCAGGTTGGGGTGAACCTGAAGAATGTGAGGTGACAGATTGCTCATTCTCAGAAGAGATTAAACAATACTTGGAGAAAAAGTTGATAAAACACACCGTAATCCTTATggcatggcagaaaacttaacGAGTTCTTATTTTCTTATAGGTATACACAACCGCTCCCCTCTTGCCCTGTACTGGAGAAACAGCTCTCTCATTACAGGGAGATCATCATTTTCatctaactagctagctagctaacatagctacGGGAGAACCCGCTGCGCTGCAGTGCTGCTTGTTGAAGATGTAGTCTTTCAACGTCAAAATTTTGTTATTACGAGATagttggggtgtgtgtgcgtgtcccATCCCCCACACTACGGAATTCTGAGTTGTAAATATTGGAGGGGTTCGTCTCACACCCAAGTGATAATCTGAGAAGATTGGACATCTCTCGCGGTCCTCGGGAATCAGAAGGGGCGAATTGACCTGAAAATTGTCTCGATTATTCTCTAGGCGTAAGAGTGTGTTTTTCAAAGGAAAGAAGCAAACCTGTAATTTGCTTTTCAGTCCTTTTCAGTTAaaactctccctctctctctggtaAACGTAGTCATTTTCAGCCACAAATAAAACACGCATGAGTTTCCGTCTCACCTCGAGTGTCGATCAGACGAGAAGTGGTAGCCGCGTGATTATTTAGCCATGCAGCTTGAACGACGCTAAACTGCAGGCTATAATCTTCTCTTGATCATGTTTGCTACATTAGattcatagctccagtgcaactTTTGCAGTTAGAAGGACGTTGTGGACGTTGTGTGCGTTTCAGACCCGGCTTTTACTTTCATCTGGGGGGCTTGACAGAGTAAACAAAACCTACATGCAcatcttctctctcacacacacacacacacacacacacacacacacgcacactgaaATGTAAACACACCTTGAGTGATTTAACCTTGTGAAGGGAATCTTCCAGAGGAGCACAGGTTCAGTTTGACGAGACCTGGGTGTGATATGATAAgctacaaacacaacacacactcctcctttcCTCATCATCTGTTCAGGCCTGATGATCACActgagttttttaaaaaatatttttaatatttaaattactgTGGTTAGAGTCTTGCGTTGTGCATCTACATTAATACACAGGACAGAGTGTGTTAAAAGTACACCTCAAAGTTTTGTATtatgagaaagaaagtgtgtgtgtgtagaggtgtgtgtttttaaaaaggattAGAGGTCCTGATGATAATCGGGCTGAGTTAAATGTCTGTtaccaattattattattattattattattattattattattattattactattattattactattatttcaGAAAAGCTTAGAAGAGACAagatatttctttttgtttactcAGGTGAAGGTCTGGGTGTGGTTTTGTTGTAGGCGTAGCAAGAATTACTTACAGTAATCATAATGTCAATGGAATGTgtgtaaaaaagtgtgtgtgtgtgtgtgtaggaggtgtgtgtttaGCCTGCAACATCAAGATCACTACAGAGCGTTATGATCTGTAAAACAAGCAGATAAGATTTGTACATCTTGTACGAGATCTGCACATTCAGCGCTTCCTCGTTTGTCATCTATTTGTTAAGGGTTTAGCATAACCCAAAGGaccaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcgttaGCAAGATGAAAGCGTCTTCATGCATTTTTCACCTCGTTCAGTTTACAGTGATTAAAATGGTGTTGATTCAGTACACACAGGAAACTGTACGCTAGGGTGAAAAGGATCAAGCGATTAAAAAAgccatgtttttattcatttctagtggaagtatactttaagtgttttagattgtgtgtgtatttgtgtgtgtccatATATATGCTGATGGCTCTTTCCATGAACTTTGCAttcattattctttaaaaatgttgcagtgacacaaaaaaagagttaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465450 lncRNA upstream 60 5831544 ~ 5856234 (+) False LOC113544283
TU465463 lncRNA upstream 41223 5814204 ~ 5815071 (+) True G392559
TU465441 lncRNA upstream 90089 5765901 ~ 5766205 (+) True G392541
TU464506 lncRNA upstream 165895 5689350 ~ 5690399 (+) True G391673
TU464507 lncRNA upstream 169178 5686409 ~ 5687116 (+) True G391674
TU465470 lncRNA downstream 23196 5882883 ~ 5901167 (+) True G392565
TU465494 lncRNA downstream 107042 5966729 ~ 5969232 (+) True G392578
TU465488 lncRNA downstream 149335 6009022 ~ 6028337 (+) True G392575
TU465532 lncRNA downstream 310277 6169964 ~ 6213340 (+) True G392610
TU465571 lncRNA downstream 508640 6368327 ~ 6376260 (+) True G392644
XM_026943219.2 mRNA upstream 83041 5758941 ~ 5773253 (+) True tmem154
XM_034301285.1 mRNA downstream 105797 5965484 ~ 5979895 (+) True gatb
XM_026942936.2 mRNA downstream 105797 5965484 ~ 5979895 (+) False gatb
XM_034301286.1 mRNA downstream 105797 5965484 ~ 5976746 (+) False gatb
XM_026943116.2 mRNA downstream 149576 6009263 ~ 6026147 (+) False sh3d19
XM_026943118.2 mRNA downstream 149576 6009263 ~ 6026147 (+) False sh3d19
TU461743 other upstream 4905887 934929 ~ 950407 (+) False G389438
TU461983 other upstream 5051078 804360 ~ 805216 (+) True G389525
TU461981 other upstream 5055728 790488 ~ 800566 (+) False G389524
TU465523 other downstream 366670 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 366670 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 756272 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 756272 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 756272 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile