RNA id: TU465606


Basic Information

Item Value
RNA id TU465606
length 1833
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G392679
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 6478250 ~ 6480082 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggaaatgagctggaagtgttactgagcatcttgcagaatcagtcacagttcttctggagaatttcactgtcacactcgcttcttatttctgcagcgaaacccagcagccttcattatgtttttttgtctgaaaagtgtctcttatggaatctgctgctttctttactgacatacaaacatttttctgtaattttgtgctggaaaactaatgtttggaaatctaaaaagtttttctactgaatcaataatgtagaagtcatcaaataaaaatctataacaaagtttgtactaaaaaaaatagggttcctaagacttttgcacagtactgtaattaagtgatatttttatttccttaaaggaatatttcagtgtttttcaacctGATGTGTTATTTCTGTATCTGTAATATATGTGTGAATAATACAGACGTTTCTGTAGAATTTCTCTCGCCCTGAACTTGGAAAAGATTGGAAAAGTTTTACTTTTCTCCAAACTTCCTTATAATGGGTGTCTAAGGGCGGAGCATGTAATAAACATACGGCATgtaagttgtgtgtaaatgaagctttatatgtgtataattcAGCTTTTCATGGGTAGATGGGATTACTTTTTCAGAAGGAGGAGTTTGTGGTTATGCGAGTGATGTCAGTGTAGATGTGTGGAAAGCATAACATTAACCGGAACtactttcctttatttatttattgttccaTTGTTAAAAAGTTGGAGAAAGCTCTAGAATAACAGTGAATTTTAGTGAATTTTTCCTCACGTCTGCTGCATCCTCACCTCTTTAATCAGTGTAGTGACTTATATTTCCAATCCTTAGTCATGTATTTCAAATGTTTATTCACAAAGCTCGACATGCGTCCTTAGCCTTCAATGGCGCGTAcgtttttttatgtatttatgttcttttctcagtacaggaaaaCATGCTGAAATTCTTATCTATGTTAATCATACGTACATTGCAGATATGAAAGATTAGGGTTAGACTGAGAAACAGTGGAGTACTTCTTTAACACATTTGCAGtcccacaaaacacacagcttcactCTGTCACAAACAGGAGCAACACGTGGCCAAATGTGTTACGCTGCTTCTGTTACAAGAAGCCACAAAAACAGTTTGAAATGAAAGAGCGGTTGCTAGTTATGTCCTGTCTGTCACAGGACACCAGGAACAAATCAGGCTTGCTGAGAAACaacaggtcatgtgactgcGAGCAGCGACAGCAACACCATCACAGCATGCAAACGGCCATTTCATAATAAGAATAAAGATAAAAGTAtatcaaaatgaataatacAAAGCAACACATCAAATAAACGGCCAAAAGCTTAGATAACTGTGGTCTGAAATTTCAGGAGGATCGGCTTGTTTGTGCAAGGATCCAGATCACGCTTAATGTGCTGGGAAAAAAATTCTCACGATACAAATGTCACTCTGTAACATCACGGCATCGTGGTAAGGGTCTTAAGCTCCTCCATACAGCTAGTCTCCGCCCCTTTTGTCCCCTCCTCTGCACGGATCTTGTTTATAACCATGTCTCCACTCCGGGAAGATTTCACCGACATTCTCGTGAGGCCCGAGCTGCTCGTATTGATTGTGGAACGTCGTCCGGAGGTCGAGGAGTGGTCTGAGTTGGTTCCTTCAAACAGTTTGGCCATGAAGCCGAGGCCAGCACGGCGGATGTGTGAGCTGCCAGCGAACACGTAGAGCACAGGGTTCACGCTGCTGCTCAGAAACGCAAACGCCGTCACGTTGGGACGAACAGAAAGCGCCACAGTATAAAGACCAGAGCGGCCCTGTGCCAGACCAATCAC

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465571 lncRNA upstream 101990 6368327 ~ 6376260 (+) True G392644
TU465532 lncRNA upstream 264910 6169964 ~ 6213340 (+) True G392610
TU465488 lncRNA upstream 449913 6009022 ~ 6028337 (+) True G392575
TU465494 lncRNA upstream 509018 5966729 ~ 5969232 (+) True G392578
TU465470 lncRNA upstream 577083 5882883 ~ 5901167 (+) True G392565
TU465608 lncRNA downstream 867 6480949 ~ 6481497 (+) True G392681
TU465609 lncRNA downstream 2456 6482538 ~ 6483100 (+) True G392682
TU466091 lncRNA downstream 183672 6663754 ~ 6664922 (+) True G393056
TU466092 lncRNA downstream 183672 6663754 ~ 6665049 (+) False G393056
TU466093 lncRNA downstream 183672 6663754 ~ 6665049 (+) False G393056
XM_026943142.2 mRNA upstream 15724 6415294 ~ 6462526 (+) True LOC113544357
XM_026943145.2 mRNA upstream 15724 6415294 ~ 6462526 (+) False LOC113544357
XM_026943146.2 mRNA upstream 15724 6415294 ~ 6462526 (+) False LOC113544357
XM_026943144.2 mRNA upstream 15724 6415294 ~ 6462526 (+) False LOC113544357
XM_034301274.1 mRNA upstream 120487 6346748 ~ 6357763 (+) True ncapg
XM_034301186.1 mRNA downstream 31506 6511588 ~ 6542180 (+) True heatr5b
XM_034301268.1 mRNA downstream 63028 6543110 ~ 6579929 (+) False LOC113544279
XM_034301267.1 mRNA downstream 63029 6543111 ~ 6579929 (+) True LOC113544279
XM_026942971.1 mRNA downstream 132069 6612151 ~ 6615645 (+) True LOC113544278
XM_034301080.1 mRNA downstream 134777 6614859 ~ 6618682 (+) False LOC113544406
TU465523 other upstream 239180 6226357 ~ 6239070 (+) False lrba
TU465524 other upstream 239180 6226357 ~ 6239070 (+) False lrba
TU461743 other upstream 5527843 934929 ~ 950407 (+) False G389438
TU461983 other upstream 5673034 804360 ~ 805216 (+) True G389525
TU461978 other upstream 5680921 793553 ~ 797329 (+) False G389524
XR_004577479.1 other downstream 135877 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 135877 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 135877 6615959 ~ 6618682 (+) False LOC113544406
XR_003404502.2 other downstream 135877 6615959 ~ 6618682 (+) False LOC113544406
XR_004577480.1 other downstream 135877 6615959 ~ 6618682 (+) False LOC113544406

Expression Profile