RNA id: TU466173


Basic Information

Item Value
RNA id TU466173
length 470
lncRNA type read_through
GC content 0.47
exon number 3
gene id G393113
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 6720882 ~ 6745244 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGTTGCCGGATATCCGGTGGCTGGAATCATCGAAGACAACGCGTGTTCACAAACAGCTCGACTGTGAAAATTGGTCGAATTGGcgcaaacagaaaaaaaaacactgaagaaacGAAATATTAACCATCAGGAATCTGTTGAATAACCGCCGCCATGTTTCTGCAGTTTTACCTCAACGAGAACGGAGAGAGAGTTTACACACTGAAGaAGGTGGATCCACAGGGTCGGCCCACCAGCTCTGCCCACCCAGCTCGCTTCTCTCCTGATGACAAGTTCTCCAGACACCGAGTGACTGTGAAGAAACGCTTCGGATTACTGCTCACCCAGCAGCCACGACCTGTCCTGTGAAACGCTACCAATGGACAttcattgagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgcgtgttattATACTGAATCTTGCATTACCAAACTTTTTTAGATGTTGCTGTTTAATAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466092 lncRNA upstream 55833 6663754 ~ 6665049 (+) False G393056
TU466093 lncRNA upstream 55833 6663754 ~ 6665049 (+) False G393056
TU466091 lncRNA upstream 55960 6663754 ~ 6664922 (+) True G393056
TU465609 lncRNA upstream 237782 6482538 ~ 6483100 (+) True G392682
TU465608 lncRNA upstream 239385 6480949 ~ 6481497 (+) True G392681
XR_003404503.2 lncRNA downstream 35126 6777336 ~ 6779937 (+) True LOC113544411
TU466194 lncRNA downstream 76093 6818303 ~ 6820739 (+) True G393124
TU466210 lncRNA downstream 101213 6843423 ~ 6895471 (+) True G393140
XR_004577473.1 lncRNA downstream 112445 6854655 ~ 6862823 (+) True LOC117596334
XR_004577474.1 lncRNA downstream 112445 6854655 ~ 6862823 (+) False LOC117596334
XM_026943278.2 mRNA upstream 10127 6699072 ~ 6710755 (+) True lpcat4
XM_034301392.1 mRNA upstream 24462 6688520 ~ 6696420 (+) False emc4
XM_026942872.2 mRNA upstream 24462 6689075 ~ 6696420 (+) True emc4
XM_026943064.2 mRNA upstream 33526 6673138 ~ 6687356 (+) True si:cabz01101003.1
XM_026943062.2 mRNA upstream 49645 6647652 ~ 6671237 (+) False LOC113544317
XM_026943274.2 mRNA downstream 4459 6746669 ~ 6759904 (+) False tox4b
XM_026943275.2 mRNA downstream 4459 6746669 ~ 6759904 (+) False tox4b
XM_034301347.1 mRNA downstream 4463 6746673 ~ 6759904 (+) True tox4b
XM_034301348.1 mRNA downstream 4463 6746673 ~ 6759904 (+) False tox4b
XM_034301216.1 mRNA downstream 20259 6762469 ~ 6776344 (+) True supt16h
XR_004577479.1 other upstream 102200 6615959 ~ 6618682 (+) True LOC113544406
XR_004577472.1 other downstream 154783 6896993 ~ 6900940 (+) False LOC117596330
TU466595 other downstream 685408 7427618 ~ 7430910 (+) True G393467
TU467438 other downstream 1516718 8258928 ~ 8259302 (+) True G394251
trnal-cag_18 other downstream 1953987 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 2393747 9135957 ~ 9137421 (+) False LOC113544250

Expression Profile