RNA id: TU466410


Basic Information

Item Value
RNA id TU466410
length 219
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G393301
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 7085797 ~ 7086015 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cCTCAATTCAATTGAGGTGCACACcatgccaaaccttgaggtggatgggccacaacagctgaagaccacatcaggttccacccctgtcagccaagaaccagaatctgaggctacaatgggcacagattcaccaaaactggatagTTTCAGTTTCAACACAGTTTCATGGTAATTAGGTGTTGAGTTAAAGGAAAACAGTGTTGTGACACTGTATACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466402 lncRNA upstream 24127 7055328 ~ 7061670 (+) True G393293
TU466225 lncRNA upstream 136489 6944819 ~ 6949308 (+) True G393150
XR_004577471.1 lncRNA upstream 186785 6896993 ~ 6899012 (+) True LOC117596330
TU466182 lncRNA upstream 204271 6877171 ~ 6881526 (+) True G393116
XR_004577473.1 lncRNA upstream 222974 6854655 ~ 6862823 (+) True LOC117596334
XR_004577478.1 lncRNA downstream 47081 7133096 ~ 7151569 (+) True LOC113544421
XR_004577477.1 lncRNA downstream 69362 7155377 ~ 7163031 (+) True LOC117596340
TU466466 lncRNA downstream 91805 7177820 ~ 7245118 (+) True G393351
TU466519 lncRNA downstream 205223 7291238 ~ 7349517 (+) True G393394
TU466517 lncRNA downstream 224798 7310813 ~ 7332101 (+) False G393394
XM_026942923.2 mRNA upstream 43885 7034279 ~ 7041912 (+) True LOC113544234
XM_026943225.2 mRNA upstream 53067 7000205 ~ 7032730 (+) True casq1b
XM_026942877.2 mRNA upstream 139074 6940267 ~ 6946723 (+) False zgc:92594
XM_026942963.2 mRNA downstream 215624 7301639 ~ 7306530 (+) True LOC113544270
XM_034301380.1 mRNA downstream 315354 7401369 ~ 7409804 (+) False si:ch211-63p21.1
XM_026942870.2 mRNA downstream 315357 7401372 ~ 7409804 (+) True si:ch211-63p21.1
XM_026942869.2 mRNA downstream 315359 7401374 ~ 7409804 (+) False si:ch211-63p21.1
XM_026943190.2 mRNA downstream 327181 7413196 ~ 7419635 (+) True LOC113544382
XR_004577472.1 other upstream 184857 6896993 ~ 6900940 (+) False LOC117596330
XR_003404500.2 other upstream 467115 6615959 ~ 6618682 (+) False LOC113544406
TU466595 other downstream 341603 7427618 ~ 7430910 (+) True G393467
TU467438 other downstream 1172913 8258928 ~ 8259302 (+) True G394251
trnal-cag_18 other downstream 1610182 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 2049942 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 3014997 10101012 ~ 10116924 (+) True agpat4

Expression Profile