RNA id: TU467149


Basic Information

Item Value
RNA id TU467149
length 202
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G393994
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 7922145 ~ 7922346 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAattgtatttttcattcattatgaAAACTCTATGGAAAAAAAGTGAtcacttataacagctataaacagtcatttcttcaccagcctgtttttttcaaaaaaaaaatattaaaaaaatgcagctagttatattactgagaaaccacaaagtcctcAGTAATGAAGAATTAGAAAGCGTAAAGCTAAGGCTTTATCTAAG

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466613 lncRNA upstream 393590 7448634 ~ 7528555 (+) True G393484
TU466576 lncRNA upstream 550644 7367880 ~ 7371501 (+) True G393450
TU466519 lncRNA upstream 572628 7291238 ~ 7349517 (+) True G393394
TU466517 lncRNA upstream 590044 7310813 ~ 7332101 (+) False G393394
TU466466 lncRNA upstream 677027 7177820 ~ 7245118 (+) True G393351
TU467152 lncRNA downstream 1600 7923946 ~ 7924834 (+) True G393997
XR_003404486.2 lncRNA downstream 68386 7990732 ~ 8006786 (+) True LOC113544216
TU467277 lncRNA downstream 138457 8060803 ~ 8061192 (+) True G394103
TU467316 lncRNA downstream 214936 8137282 ~ 8137508 (+) True G394142
TU467321 lncRNA downstream 219501 8141847 ~ 8142593 (+) True G394147
XM_026943265.2 mRNA upstream 286098 7620100 ~ 7636047 (+) True LOC113544435
XM_026943190.2 mRNA upstream 502510 7413196 ~ 7419635 (+) True LOC113544382
XM_034301380.1 mRNA upstream 512341 7401369 ~ 7409804 (+) False si:ch211-63p21.1
XM_026942870.2 mRNA upstream 512341 7401372 ~ 7409804 (+) True si:ch211-63p21.1
XM_026942869.2 mRNA upstream 512341 7401374 ~ 7409804 (+) False si:ch211-63p21.1
XM_026943269.2 mRNA downstream 36537 7958883 ~ 7978619 (+) False LOC113544437
XM_026943268.2 mRNA downstream 36539 7958885 ~ 7978619 (+) True LOC113544437
XM_026943170.2 mRNA downstream 94866 8017212 ~ 8051220 (+) True efemp1
XM_026943172.2 mRNA downstream 94866 8017212 ~ 8051220 (+) False efemp1
XM_026943173.2 mRNA downstream 94866 8017212 ~ 8051220 (+) False efemp1
TU466595 other upstream 491235 7427618 ~ 7430910 (+) True G393467
XR_004577472.1 other upstream 1021205 6896993 ~ 6900940 (+) False LOC117596330
XR_003404501.2 other upstream 1303463 6615959 ~ 6618682 (+) False LOC113544406
TU467438 other downstream 336582 8258928 ~ 8259302 (+) True G394251
trnal-cag_18 other downstream 773851 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 1213611 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 2178666 10101012 ~ 10116924 (+) True agpat4
XR_003404491.1 other downstream 2276977 10199323 ~ 10239199 (+) False LOC113544300

Expression Profile