RNA id: TU467330


Basic Information

Item Value
RNA id TU467330
length 1319
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G394156
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8152460 ~ 8153778 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccgggttcgattcactctcagtgccagtcccaagcccagataaaaccggggagggttgcatcaggaagggcataaaatatgccaaatcaaacatgcggaccaatgaatccgctgtggcgacccctaagaagaacaacaacgtataatattaataataataagttagggctaaatcttctgtcagcttaataattttttatggGGCTTACAGCTACAGCAAGACAGACCGGCACATCCTCCATTTATACAGcaacatttcttttgtcataattaaatgattcgttttatttgtcttaatttacgggtttgtgttggctagctttctttattattattctttttttacattctttaatcaatgccaataatataaaacgaCTGGTTTCCACAAAATGTTCTGGATGCTATTCTTAGTCACTGTCCtggtgaactagcatgagggggtgtttttgatagagactccaaagcacttctgtaagccGCTCTGGataaaatgctgtaaacgtaataaaaataatcaaattaacctcaacagtatattccatatataaaagtgcagtaaagtGTGCAAATTATATGAGCTGAAATGATCTGAAGTccaggtttacattagttattcTTCTTATGCGTAAGtctgcacacactcaggagcacgagtaggttACGAAcgtttttccaaatttacaggattttcataaataaatacttgggatttcttgtgtaaatgcttgaAAGAactatttatgaataaatctgttggTATCCAGGttcataaatgaggcccagtgtgaGTACACAGAccaagtgtttcatttctgAACTGACTCCACTTCACTGGAGCTGAAACTGCTCAGATTAACCTCCAGAAAGCAGTGGTTGTTCTGGGAGTCGGATGGCGCCTCCTTCTGGCGACAAACTTCCTCCAGTGTCTTTCTCAGATAAGCGTTTTCCTCCCTCACTTTATTCATGTCCTCCTCAGAGTGACTACTGGACTTTCTAGAAAATTTAGACGCCATTTTTCTGAACCTGCAAAACAACATAACTTTAGATAACAGTCATTTTTCTTCACTGTAGTTAATCTAACCGTTAACCGTGTGTATGAGAGCTAGCTAATTTGCTAGCTGTTTAACGTTAGCCACAATTAGCGTAAATTACAGCTCTTTTAGATAAGAATTATTCGAGAATAAAAAGGCATTTTTTGTCTAATCCTCGGCTATCACCTTTAGCTGTACCTGAACAAAATATATACCTGTTAAcctgactttatttataaaatctttttttctccatatttgGGAAACTTTATCACTCACGCGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467329 lncRNA upstream 72 8151403 ~ 8152388 (+) True G394155
TU467327 lncRNA upstream 3428 8148554 ~ 8149032 (+) True G394153
TU467324 lncRNA upstream 6343 8145443 ~ 8146117 (+) True G394150
TU467321 lncRNA upstream 9867 8141847 ~ 8142593 (+) True G394147
TU467316 lncRNA upstream 14952 8137282 ~ 8137508 (+) True G394142
TU467413 lncRNA downstream 80901 8234679 ~ 8235160 (+) True G394229
TU467447 lncRNA downstream 125756 8279534 ~ 8280204 (+) True G394260
TU467449 lncRNA downstream 131228 8285006 ~ 8285339 (+) True G394262
TU467489 lncRNA downstream 266904 8420682 ~ 8440437 (+) True G394291
TU467505 lncRNA downstream 312491 8466269 ~ 8466602 (+) True G394306
XM_026943203.2 mRNA upstream 27022 8067433 ~ 8125438 (+) True LOC113544397
XM_026943204.2 mRNA upstream 27022 8067433 ~ 8125438 (+) False LOC113544397
XM_026943205.2 mRNA upstream 27022 8067433 ~ 8125438 (+) False LOC113544397
XM_026943172.2 mRNA upstream 101240 8017212 ~ 8051220 (+) False efemp1
XM_026943106.2 mRNA downstream 273 8154051 ~ 8168988 (+) True cilk1
XM_026943123.2 mRNA downstream 53892 8207670 ~ 8237492 (+) True vit
XM_026943124.2 mRNA downstream 53892 8207670 ~ 8237492 (+) False vit
XM_026943125.2 mRNA downstream 53892 8207670 ~ 8237492 (+) False vit
XM_026943127.2 mRNA downstream 53892 8207670 ~ 8237492 (+) False vit
TU466595 other upstream 721550 7427618 ~ 7430910 (+) True G393467
XR_004577472.1 other upstream 1251520 6896993 ~ 6900940 (+) False LOC117596330
XR_003404501.2 other upstream 1533778 6615959 ~ 6618682 (+) False LOC113544406
TU467438 other downstream 105150 8258928 ~ 8259302 (+) True G394251
trnal-cag_18 other downstream 542419 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 982179 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 1947234 10101012 ~ 10116924 (+) True agpat4
XR_003404491.1 other downstream 2045545 10199323 ~ 10239199 (+) False LOC113544300

Expression Profile