RNA id: TU467489


Basic Information

Item Value
RNA id TU467489
length 1575
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G394291
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8420682 ~ 8440437 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acacacacacacacacacaaacatattaaatatcagccaactgtgtgtgtgtaagggaaAGTGCAAAAATATAGACAGACGGCAGAAACTGCCACCACTGCGTTGTACACAGGAAATGGATGCCGCTCAAGTATTGAGCAGAGAAGTGAAAGCCGATCTCAACGTCAATACCAAGCACACCGATCCGTACATCTTCCTGCAGACAGAGGACAAAAGATCCAGAGGACAAGAGTGTGTTGGTACACTTCCCATATGGTGTTTATCCACACCGAAATGAAACGCTAATATTTATGGCATTGAGGGGAAGATTTTGTTTCTTACATGCTTGCTCAACTTGTAGCAACAGGGATAGAGACAGAACTTGCTGCACCCTTTTAAAGATATACATACCCTCACTGACAACTCTATTAGGAACACGTGTACAACACGTGTACACCTGCACGTTCATGGAATAACCAATAAGGCTGCAACatgacaaaatgtgaaaaaaaaaacaaaaaacgaagGAATCTGAACACTTTCTGAATGCACCGTGTataaatactttatatatactgtagttagagatagatagatagatagataggcagatagatatagatattattatatttagatATAGCAGTCACAGAAGGCCTTCCAGTTCTTGCATTGAAGGTGTCTTGAATGTTCAAAGATAGCtccaaagatttaaaaaaaaaaaaaaagcttaacgTCTAATTCTTTCCTATTTTATTCTTTCAGAACTTTTATAAGTCagtcttttttatgttttatgatggTTTTGGCTATGTGATGCCCCACACGTTTGTCTTTGCATGTTCATCTCCATTTGTTTCTGAGCATGTAAGCAATCTTCACGTCCCACAGAAAActctaaaatgtaaaacagaTGAGTCTACAGGACGCCGCTTGCTTCAGTCAGCTCGCCGAGATCAAATTCTGCATCGGAAGACTGTATCGCGTTACTAGCTGTCGAAAATGTACACACTTTAATCCAATACgcacattcttcttttgtcaacaCTTCTTTTAGCTAGATCAATGTGGCACAGTGTCTCAAACTGAAGTGGATATACACTAAgtacttgaagaaaaaaaaaatgggaacaGCCTGTCTGTGTTCTTTTTCCGCTTTTAGAAAAGTGATCAGTATTGTAACCTTTACTATGGTTTATTTCAGAACATTACTACGTGCTTTATGCATGTCATTCTGCCATTTACTGCATTGTGGATAGGACAGATTCTCCACTTAGATTGTACTGAACTCTTGTATCAAGAGCAAGTCAAAGTGttaattgtgtgcatgtgtgtatgtctaaATTAGTGGGTCGCcgaaggtcaaatgtctgattTGCAAGTGACCAAACAGCTTCCTGTTTTTAACTTCACTCTTATACATCTTACGTTTTCATTGgctaattttcatttttcattcacctTTACCAAATCATACAACATAATACAACATAcatcataatattttattacacagtGGATATCAAAAgtccacacacccctgttaaaatggcagatttctgtgatgtaaaaaaatgaaatcaagataaatcatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467449 lncRNA upstream 135343 8285006 ~ 8285339 (+) True G394262
TU467447 lncRNA upstream 140478 8279534 ~ 8280204 (+) True G394260
TU467413 lncRNA upstream 185522 8234679 ~ 8235160 (+) True G394229
TU467330 lncRNA upstream 266904 8152460 ~ 8153778 (+) True G394156
TU467329 lncRNA upstream 268294 8151403 ~ 8152388 (+) True G394155
TU467505 lncRNA downstream 25832 8466269 ~ 8466602 (+) True G394306
TU467590 lncRNA downstream 220259 8660696 ~ 8661230 (+) True G394373
TU467767 lncRNA downstream 412107 8852544 ~ 8852767 (+) True G394520
TU467774 lncRNA downstream 472443 8912880 ~ 8913084 (+) True G394527
TU467802 lncRNA downstream 567437 9007874 ~ 9008080 (+) True G394555
XM_026943208.2 mRNA upstream 10141 8400794 ~ 8410541 (+) True LOC113544399
XM_026943209.2 mRNA upstream 10141 8400794 ~ 8410541 (+) False LOC113544399
XM_026943138.2 mRNA upstream 31235 8378414 ~ 8389447 (+) True chs1
XM_034301039.1 mRNA upstream 70556 8329665 ~ 8350126 (+) True LOC113544353
XM_034301321.1 mRNA upstream 119671 8289291 ~ 8301011 (+) True LOC113544354
XM_026942941.2 mRNA downstream 34447 8474884 ~ 8486535 (+) True LOC113544248
XM_034301390.1 mRNA downstream 55639 8496076 ~ 8583090 (+) False LOC113544387
XM_034301389.1 mRNA downstream 80639 8521076 ~ 8583090 (+) True LOC113544387
XM_026943101.2 mRNA downstream 169030 8609467 ~ 8623393 (+) True slc12a10.1
XM_026943122.2 mRNA downstream 221807 8662244 ~ 8685925 (+) True nvl
TU467438 other upstream 161380 8258928 ~ 8259302 (+) True G394251
TU466595 other upstream 989772 7427618 ~ 7430910 (+) True G393467
XR_004577472.1 other upstream 1519742 6896993 ~ 6900940 (+) False LOC117596330
XR_003404502.2 other upstream 1802000 6615959 ~ 6618682 (+) False LOC113544406
trnal-cag_18 other downstream 255760 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 695520 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 1660575 10101012 ~ 10116924 (+) True agpat4
XR_003404491.1 other downstream 1758886 10199323 ~ 10239199 (+) False LOC113544300
XR_004577523.1 other downstream 1758886 10199323 ~ 10224804 (+) False LOC113544300

Expression Profile