Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026910787.2 |
| length | 915 |
| RNA type | mRNA |
| GC content | 0.58 |
| exon number | 6 |
| gene id | rps6 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047622.1 |
| NCBI id | CM018568.1 |
| chromosome length | 15845479 |
| location | 284647 ~ 289660 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0042593 | glucose homeostasis | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0022627 | cytosolic small ribosomal subunit | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02991 | RP-S6e, RPS6; small subunit ribosomal protein S6e |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU461800 | lncRNA | upstream | 103634 | 150180 ~ 181013 (+) | True | G389456 |
| TU461811 | lncRNA | upstream | 111553 | 170557 ~ 173094 (+) | False | G389456 |
| TU461865 | lncRNA | upstream | 138061 | 99214 ~ 146586 (+) | False | G389456 |
| TU461779 | lncRNA | upstream | 235027 | 47572 ~ 49620 (+) | True | G389450 |
| TU461907 | lncRNA | downstream | 20555 | 310215 ~ 328491 (+) | False | smu1b |
| TU461926 | lncRNA | downstream | 49213 | 338873 ~ 346593 (+) | True | G389490 |
| TU461929 | lncRNA | downstream | 49940 | 339600 ~ 375948 (+) | True | G389492 |
| TU461930 | lncRNA | downstream | 58980 | 348640 ~ 350005 (+) | False | LOC117596315 |
| TU461763 | lncRNA | downstream | 63147 | 352807 ~ 374670 (+) | True | G389442 |
| XM_034301241.1 | mRNA | upstream | 103905 | 125116 ~ 180742 (+) | True | LOC113524531 |
| XM_034301261.1 | mRNA | upstream | 136905 | 145825 ~ 147742 (+) | True | LOC117596366 |
| XM_034301262.1 | mRNA | upstream | 170034 | 112191 ~ 114613 (+) | True | LOC117596367 |
| XM_034301264.1 | mRNA | upstream | 210193 | 69450 ~ 74454 (+) | True | si:ch211-217k17.11 |
| XM_034301263.1 | mRNA | upstream | 213922 | 69455 ~ 70725 (+) | False | si:ch211-217k17.11 |
| XM_026910783.2 | mRNA | downstream | 1319 | 290979 ~ 306559 (+) | True | smu1b |
| XM_026910784.2 | mRNA | downstream | 4856 | 294516 ~ 306559 (+) | False | smu1b |
| XM_026910831.2 | mRNA | downstream | 43479 | 333139 ~ 336059 (+) | True | LOC113524533 |
| XM_034301027.1 | mRNA | downstream | 58736 | 348396 ~ 350003 (+) | True | LOC117596315 |
| XM_034301313.1 | mRNA | downstream | 115450 | 405110 ~ 408556 (+) | True | LOC117596377 |
| TU461802 | other | upstream | 110455 | 170557 ~ 174192 (+) | False | G389456 |
| XR_004577502.1 | other | downstream | 1319 | 290979 ~ 328479 (+) | False | smu1b |
| XR_004577501.1 | other | downstream | 1319 | 290979 ~ 310720 (+) | False | smu1b |
| trnak-uuu_21 | other | downstream | 27922 | 317582 ~ 317654 (+) | True | trnak-uuu_21 |
| TU461928 | other | downstream | 43842 | 333502 ~ 348335 (+) | False | LOC113524533 |
| TU461720 | other | downstream | 112342 | 402002 ~ 932118 (+) | False | G389438 |
