RNA id: XM_026942870.2


Basic Information

Item Value
RNA id XM_026942870.2
length 1906
RNA type mRNA
GC content 0.41
exon number 6
gene id si:ch211-63p21.1
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 7401369 ~ 7409804 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCGCGATTACGTTCCCTGTTTTGGGAATTTTATTTATGGCACGCGCGTTCTCGACGTGCTCTCTGGCTCTCTAACGCTGTCACCGACTACAATGTCAAACCTTTTAGGAGTATCGCGAGCTTCCGTTTTCACGCCAAGGGCAGAAGATCCGTcgtgatttgtttgttgatttatttttgaccCGAACTGACTTCACTTGAAGGGATATTTTGCGCTAAAGTGATGCTGTCTTCACAATAAACCAAGCTAAGGTCTATGTTAGAGCGACGAAGACAGAAATGGAGGTGACAAGGCGAAGAGACTCCAGTGGCCAGTTCTCTGACAACTCGGACCATGACTGTGAGgtacagagGAAAGCAGCCTGAAGTGTAACGAATGTGGGAAAAACAGGGCAATAATGGCCAGATACTCAGAGGGCTATGGCACTGAGGAGGAGTGCGTCCAGTCCGATCCTCAGCGAGAGAGCGATGCAGATGCAGACGTAGAGGATGCAGACACCAGACTACAGGTCGTGGGCTCTCTCCAGCGAATCAGCTCTCGGAAACGAAGGCGTCAGCGAGTAACCCGGCAAGACACCACAGAGAGCGAGGATGATGGGGGACAGAGCCACAGGAACCACCGCTGGAGTCTGAGATTGAGTCCCCATCGCTCACCCAGTAGAACCATACTagagGAAAGTGTTTCTCAGGTCAGGCCGCTGGTGATTTGTCACTGTAATCCAGCAGATACCCCGGCTGCTTCAGACAACCACCCCGAAAAAGGAAAATGGTCGACGAACATAtggcctttctctctctctttacctcttttcttcttcctcattcTTCTCCCCCTCTTCATTTCCATCATAATTGTGTTCTTTTCATTCCTCTTCCCGCTTACTAATACCTGACCCCCTCTGCAACAGATACCTCAAGGAATCAGTTTTTTTGTTGATACGTATACTATGAGAAGCACAAAAATTGGCCTTGAAACGAAAGTGTAACGTCTGATACATGTTAGCTAGAGGATATTAGTTGCATTAATTATTTGAACCCTTACGTAAGagtttaaaatacattacatcactaatacattttttttgtcagaatgCTGTAATTCACTCCTTATTCCTTTCTGTTATCTTGACTgaagtgtcagtgtgtaatcaCCCACAATAATCCATCGTATTGCATTTATTaatggttatttaaaaaaaaaagcaaaaatcttAATTAGATCATTAATTTGCTATTTATTACGGCTTGTTATTAAGTGTCACCATGATTGTTTTGAGCTCAGATGTTATTTCCTACGCCACCAGTGcgtgtctgtgtatatgtgtacgTATAGATGCTCGAGTGTTTGAGAGCCAAAGCATCACAGTAACATGATGCGTGCATGGAAAGATTGAACACGGAAACGAATTACTATGCAATGTACAGACAAGTCTTTTAGGGTatgtttatgatagaaaatacactttttttttttttaattttcattttgtgaATGCATGGCTGAAGTAATATTAAGCAAACCTCAACGGATGCATCAAATCTGTGATAAGTGGCAGAGCTTATTACTTATTTCGATTAAGTTTCACATCAATGTTAGCATTAAAGATTTAAGTGCTAGTTATGTTTAAGTGAGAagtacatttaatgtcattttcttttcctctgtactgttttttttttaaatgcatcttAATAACAGCCCTGATGCGATTGCTCAGGCATTCCTGTTCAGTATTATGTTTAATGCTATTAAGTTTGTGCTTTTACAGCTCCACAAGCTCCATGACGTTTCTGTCTGTGTCACGGTCTCATGCTTTTCCTcttaagctttaaaatgaaaatgaggtGTATGTTTGTGAAAATTTTGGGTCCATttgaacataaataaaaatttggtTTGAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466576 lncRNA upstream 29871 7367880 ~ 7371501 (+) True G393450
TU466519 lncRNA upstream 51855 7291238 ~ 7349517 (+) True G393394
TU466517 lncRNA upstream 69271 7310813 ~ 7332101 (+) False G393394
TU466466 lncRNA upstream 156254 7177820 ~ 7245118 (+) True G393351
XR_004577477.1 lncRNA upstream 238341 7155377 ~ 7163031 (+) True LOC117596340
TU466613 lncRNA downstream 38830 7448634 ~ 7528555 (+) True G393484
TU467149 lncRNA downstream 512341 7922145 ~ 7922346 (+) True G393994
TU467152 lncRNA downstream 514142 7923946 ~ 7924834 (+) True G393997
XR_003404486.2 lncRNA downstream 580928 7990732 ~ 8006786 (+) True LOC113544216
TU467277 lncRNA downstream 650999 8060803 ~ 8061192 (+) True G394103
XM_026942963.2 mRNA upstream 94842 7301639 ~ 7306530 (+) True LOC113544270
XM_026942923.2 mRNA upstream 359460 7034279 ~ 7041912 (+) True LOC113544234
XM_026943225.2 mRNA upstream 368642 7000205 ~ 7032730 (+) True casq1b
XM_026942874.2 mRNA upstream 454649 6940476 ~ 6946723 (+) False zgc:92594
XM_026943190.2 mRNA downstream 3392 7413196 ~ 7419635 (+) True LOC113544382
XM_026943265.2 mRNA downstream 210296 7620100 ~ 7636047 (+) True LOC113544435
XM_026943269.2 mRNA downstream 549079 7958883 ~ 7978619 (+) False LOC113544437
XM_026943268.2 mRNA downstream 549081 7958885 ~ 7978619 (+) True LOC113544437
XM_026943170.2 mRNA downstream 607408 8017212 ~ 8051220 (+) True efemp1
XR_004577472.1 other upstream 500432 6896993 ~ 6900940 (+) False LOC117596330
XR_003404500.2 other upstream 782690 6615959 ~ 6618682 (+) False LOC113544406
TU466595 other downstream 17814 7427618 ~ 7430910 (+) True G393467
TU467438 other downstream 849124 8258928 ~ 8259302 (+) True G394251
trnal-cag_18 other downstream 1286393 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 1726153 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 2691208 10101012 ~ 10116924 (+) True agpat4

Expression Profile