RNA id: XM_026942872.2


Basic Information

Item Value
RNA id XM_026942872.2
length 1277
RNA type mRNA
GC content 0.43
exon number 6
gene id emc4
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 6688520 ~ 6696420 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tggACCATTGGGGTTTTTGGTGTAGATCTGGCAACCTTCATGACAGGCTTGCTAAGCGCAGAGCATCGAAGCTGCAGTTATAGTccctaaatacaaataaaacacttaagattTCTGCAGAGAAGAATTATAAACCTGTATAAACAGATACTAGAGTTTAAGtAATCGGAGCCATGTCGTCACCGGGCGGACAGGGAGGAGCTTTATCTAAAGCTACAGGAGCAAAGAGGATGAAATGGGCTCTGGAGCTGAGTCTGGCCAACACCAGGACACGAGGAGACAGGCAGCTTAAGGATGGAGAAGTGATGTATCCTGTGGGTTACTCGGATAAACCAGTCCCCGACACCAGCGTTCAGGAAGCAGACCGCAACCTGGTGGAGAAGagatgctGGGATGTAGCCCTTGGTCCTCTGAAGCAAATCCCCATGAATCTGTTCATCATGTACATGTCTGGCAACACTATTTCTATCTTCCCCATCATGATGGTGTGTATGATGGCGTGGAGGCCCATTCAGGCGCTCATGTCCATGTCTGCCACCTTTAAACTGCTGGAGAGTTCAAGTCAGCAGTGGCTCCAGGGTTTGGTCTACCTGATCGGCAACTTGCTCGGCTCAGCGCTGGCCATCTACAAGTGTCAGTCAATGGGTCTCCTCCCGACGCATTCCTCTGATTGGCTCGCCTTTATTGAACCTCCACAGAGGTTGGAGATAATGGGTGGAGGATTGGTCCTGTGAGCCTTCAAAACCTCttgtacacatttacacacacaaaccttttgCCTGTTTAACacaatttcattaatttatgtatGTTATGAGTTAGATCTCCTTTGTCTTTGTTTCATGCTTCTGCTACATATAACAATGTCTTTACAAAATgagatttaataaatgtatttcagaGTTCTTTTGACTTAAAAACGTTAGCGTATTGTCTCTGTGTCAGATAAAAACCTGTTCGAGGGGGAAAACAGTTACTGACTATTGTGAATGAAAGCAGTAAATGTGTCTCGTGTCCACTCCCGTACCTGAGAAGCTGCGTCATTCTCATGACTCTTTAGTTAGATCCTGTTGGAGCTATGTCTCCGACACTGTGACACTTTAGCAAAGTGTTTGAGTTAATTACTTGTTAGAATGAATTCTAATACTCCTTATTAAACAAATTAGCAATTGTGATACATCCCACATGACTGTAAGTACTGTGTGTAGTCCTGAAGAATcctgtttattttaaaggtcaaataaaaaatatatatattgttctGAAATGTCACATGA

Function

GO:

id name namespace
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component

KEGG:

id description
K23565 EMC4, TMEM85; ER membrane protein complex subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466092 lncRNA upstream 24026 6663754 ~ 6665049 (+) False G393056
TU466093 lncRNA upstream 24026 6663754 ~ 6665049 (+) False G393056
TU466091 lncRNA upstream 24153 6663754 ~ 6664922 (+) True G393056
TU465609 lncRNA upstream 205975 6482538 ~ 6483100 (+) True G392682
TU465608 lncRNA upstream 207578 6480949 ~ 6481497 (+) True G392681
TU466166 lncRNA downstream 24462 6720882 ~ 6745244 (+) False G393113
TU466168 lncRNA downstream 24462 6720882 ~ 6745244 (+) True G393113
TU466170 lncRNA downstream 24462 6720882 ~ 6742535 (+) False G393113
TU466172 lncRNA downstream 24462 6720882 ~ 6725255 (+) False G393113
TU466173 lncRNA downstream 24462 6720882 ~ 6742210 (+) False G393113
XM_026943064.2 mRNA upstream 1719 6673138 ~ 6687356 (+) True si:cabz01101003.1
XM_026943061.2 mRNA upstream 17838 6646391 ~ 6671237 (+) True LOC113544317
XM_026943063.2 mRNA upstream 17838 6646391 ~ 6671237 (+) False LOC113544317
XM_026943062.2 mRNA upstream 17838 6647652 ~ 6671237 (+) False LOC113544317
XM_034301344.1 mRNA upstream 46456 6636928 ~ 6642619 (+) False khnyn
XM_026943278.2 mRNA downstream 2652 6699072 ~ 6710755 (+) True lpcat4
XM_034301357.1 mRNA downstream 24425 6720845 ~ 6745254 (+) True nop10
XM_034301355.1 mRNA downstream 24425 6720845 ~ 6742131 (+) False nop10
XM_034301356.1 mRNA downstream 24425 6720845 ~ 6738548 (+) False nop10
XM_026943059.2 mRNA downstream 25375 6721795 ~ 6745250 (+) True LOC113544316
XR_004577479.1 other upstream 70393 6615959 ~ 6618682 (+) True LOC113544406
XR_004577472.1 other downstream 200573 6896993 ~ 6900940 (+) False LOC117596330
TU466595 other downstream 731198 7427618 ~ 7430910 (+) True G393467
TU467438 other downstream 1562508 8258928 ~ 8259302 (+) True G394251
trnal-cag_18 other downstream 1999777 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 2439537 9135957 ~ 9137421 (+) False LOC113544250

Expression Profile