RNA id: XM_026942873.2


Basic Information

Item Value
RNA id XM_026942873.2
length 2484
RNA type mRNA
GC content 0.47
exon number 7
gene id zgc:92594
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 6939707 ~ 6946723 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATTGTGTATGACACGCAGACATGAATATTTAATCTGGTTTATACTTGTTTTGTTGATATTTTCGAGGCCGCTGCAGGTGCCACTGGAGGCGTGTTAATCCTCGTCACAGGGTCAGCTGTGATTAATTCATCaagttctttttaaataaacacaaacagcgGCGACGTTTTCAAACACAAACGAcgttatttaaacatttttggatATGTTCATATTCTAGTTAACGTTTGTTGTTGGGAATTGGTGACACCCTTTTGGTTTAAATTCTCAAAATACTTGACGTTAGCATATATGCTAATTGTCGACAAAATACTTGCGTCTCgcgcaatttttttttttttttttttttttttaaagctgtgcGCGCGAGTTCTGACGTATTTTTGCTCGTCATATTCTCTGTGCACTGAGAGACAGCGACCGCGTCCCAAACCTCTGTGCACCTGCACTGAACAGGACGTCAAAATAGTGCGCAGCCGCTGATCTGGACGCAGGCAGGCGCAAGAGGAATCACGTGACCGTCAGTGTCATTATAGATATGTGTCTGAGTGCCATCAGGTCCGCGGGTTTGCTCATCCGATAAGTTGATTTCCTGTGacgagtttgtttgtttgtttttgttttcttggagATGGACATAGATCAATATACGTAGATTAGATTAATATACTGATCTTCTCCATGTCAAAAAGAAGCATCGTCATGGCCACAGCTTTGGACGACACCAGCGTGCTGGAGGAAGAGCTGACGTGCCCCGTGTGCCTAGATCTTTACCGAGAGCCCCACCTGTTGCCATGCGGCCACAACTTCTGCCTGCAGTGTCTGCGGAGGCTGAAGAGCCGCTCAGAGCGCGGCCGTCTGCGCTGCCCCGAATGCCGAGAGAGCCATCGCTGCTCCACGCAATGGCAGAAGAACTTCAAGCTCGCCAACATCGCTGATGGCTTACGGCGCCGCAGCCGTGCCCAGAGGTCCGGCCACAGCCGACCAGGACCCTCATACAGGACCAGTGAGGTGCGCTGTGATTATTGTAGTCCGGACGTCACTGGCGATTCAGCCAAGAGATCCACAGCGGTGAAGACGTGCCTGAAGTGCGAGGTGTCCATGTGTCCAGAGCATGTTCAGCACCACCTCGAGCTCCCTGCCTTCCGCGAGCATCCACTGGTGGAGCCACTGAGCGATATGAGGAAGAGAAAGTGCATCGAGCATGACGAGATGTTTCGATATTACTGTATGGACGAGCGCAAGTTCCTCTGCAATGCCTGCACCATTGAGGGAGGGCACAGCAAGCATGCTATCAAAACGCTCAAGAATACCATGAAGGATCTGCGGGCATCTCTGGAAACACAACTGCAGAAGGTGGACAAGAAGATCAGAAGAGTAGAGAAAACTGTGCAGGAGCAAAGAGAGGTGGAACAGCAAAACAAGGCCTTCCTGGAGGAAGTGGACAAGCAGGTGGACACCCTACGAGGGGCTCTGATGACCAGGCTGGATGGATTCCTGTCGTcgctgagtgagtgtgtgcgtgcctACGAGGGGGAGAACAGCCTCAGCATCCAGCAGGAATTAGTGCGAACAGAAGAGGACCGTAGTCGCCTAGGAGTTGTGCACGCAGGCATCGAGCAGCTGCTACAGGAGAATGACCCATTCCAGTTCATTAAGgaatatatGTCATGTGCCAGAAGtTACCGCAGGCTTCTGAAAAGGCCACTGTTTCAGCCACACGCTGCGACAGTGGATACGGAGGTCATTGAGGAACGTATGGAAGGAAAACTGGAGGATTTTATGGCTGATCTGCGGGAACACATCACCGCATTCATTAACACTGTCTGTACAGGTGATGCGGTAGATGAAGGAGATGAGGGagtggaagaggaagaggaggaggaggatgaggaggaggacagCGATGAAAACGAAAACGAAAATGATAGCAGTGATGAAGACGAAGGGCAAGAGGAAGAGATGAGCGAAGAAGAGGAAGAGTATGACCACAGCGAGTCTGCTACTGACTATTCcccagaggaggaagaagaagaggaggatgagtAATACTATCCTCACTGAGCCTTCTCCACACTTGTAAGCACTTTGTTGCACTCATGAAATTAAGTGATTGCTCCTGTAACTTGTTCTGTTAATTTTTGATAaccaaaaatgaattaatatctttaaatatttagtaaAAATTTCTATCCCAGGCTGGCCACTAGGGAAGCGTAATGTGTGCTCATCTAAATAACTTGATACGAATATgaattcatatattttcaacCTGGAGTCTGATGGTGTGTTTAACATATGTGTTTtaagaaaacaatattaaacattataatgtaTACAACATTTTCGATATAACTgcagttatataaaaataaatttaaaaaagtgtgttttgatACTACTGACTGTGACTATACGTGtctacactcaccgtccactttaataggaacacctgacacctgctcatttatgcagttatccaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577471.1 lncRNA upstream 41465 6896993 ~ 6899012 (+) True LOC117596330
TU466210 lncRNA upstream 45006 6843423 ~ 6895471 (+) True G393140
TU466402 lncRNA downstream 108605 7055328 ~ 7061670 (+) True G393293
TU466410 lncRNA downstream 139074 7085797 ~ 7086015 (+) True G393301
XR_004577478.1 lncRNA downstream 186373 7133096 ~ 7151569 (+) True LOC113544421
XR_004577477.1 lncRNA downstream 208654 7155377 ~ 7163031 (+) True LOC117596340
TU466466 lncRNA downstream 231097 7177820 ~ 7245118 (+) True G393351
XM_026942968.2 mRNA upstream 3104 6926560 ~ 6937373 (+) True sb:cb1081
XM_034301216.1 mRNA upstream 164133 6762469 ~ 6776344 (+) True supt16h
XM_026943275.2 mRNA upstream 180573 6746669 ~ 6759904 (+) False tox4b
XM_026943225.2 mRNA downstream 53482 7000205 ~ 7032730 (+) True casq1b
XM_026942923.2 mRNA downstream 87556 7034279 ~ 7041912 (+) True LOC113544234
XM_026942963.2 mRNA downstream 354916 7301639 ~ 7306530 (+) True LOC113544270
XM_034301380.1 mRNA downstream 454646 7401369 ~ 7409804 (+) False si:ch211-63p21.1
XM_026942870.2 mRNA downstream 454649 7401372 ~ 7409804 (+) True si:ch211-63p21.1
XR_004577472.1 other upstream 39537 6896993 ~ 6900940 (+) False LOC117596330
XR_003404500.2 other upstream 321795 6615959 ~ 6618682 (+) False LOC113544406
TU466595 other downstream 480895 7427618 ~ 7430910 (+) True G393467
TU467438 other downstream 1312205 8258928 ~ 8259302 (+) True G394251
trnal-cag_18 other downstream 1749474 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 2189234 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 3154289 10101012 ~ 10116924 (+) True agpat4

Expression Profile