RNA id: XM_026942923.2


Basic Information

Item Value
RNA id XM_026942923.2
length 1250
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC113544234
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 7034279 ~ 7041912 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGCCCAGAAATGTCACTGCTCTGGGTATGTAAGCCAGGCACACAACAGAAATCAGAAAACTGACTTTCTGCAGACTTAGAGACACAGAAGCAGCTTAAAGTGCCACAACCAACTGCAAGCAGAACAGCTCAAGAGAAGAACGTGACAGGTATCATGTATCCAGGAATGAACATAGCAAGACCTCAGGattTGGTAATGAGCTGTATGGATGAGCTGGTTGAGAATGTGAATGAGACACGGCGGATATGTAAAGATTTGCTGAACCAGGGTCTGCTGAGTGAGGACAGGTACCGGACCATTGTAGCAGCTCCAAGCTCTCAGGATAGAATGAAGCAGCTCTTGCATGCTCTGTCTAGCAAAGGACAACAGGGGAGAAATGCCCTTTACAGACTACTACAAGAACATGAGCCTGAGCTTACTCTGCAGATGGAGCATGCCGTATATGTGCATGTGATGAGGCAGAAGCTCATTCAGTCAGTGAGGCAAGTGGAGCCAGTGGCCAACCGAATGCTCACCCAGGGCCTGATCACGGAAGAAGAGTACTTCCAGGTGTGTGAAGAGGAAGGAAGCGAAGCAAGGATGTACGCCATGTTCCAAGTTTTGGAGCAGCAAGGGATGAAACAGAGCGACGGGTTCTACAATGCGCTTTTCCACTGTGAGCCTTTACTGTACCGTGAGCTAGAAAAAGACCGAGTGCTTCAGATGTGTGAACTGGATAAAGAAAATGACCAATTAGTGCACCTTATACAGGAGGACAATCTAgaagagaggtggagagagctggaaagcaaagaaaagcaagtggaaaaagagaaggagaagctGAGGAGGGAGTGGGACCttttagaaaaacagaaagcagagaTGGATCAGGAGAGAAAGCAAGTCCTTGAAATGAAACGTGAACTTGAACAATTCTGGAGGAAGCGGGATGAGACGGAGGAGGATGTGATTTCTCACTTTCACACTGGAATAGAAGAGCAGAGAATGACAGGACAATGGGGACACCTGAATAACAATGGCTACTCCATGTCAGTAAATGTGAACAACTTCTTGTCGTTCAACTGATCTCTGattaatgaactgaaaaaaatcacacaaatgaTGTAACCATAACAGGCCTTTTCAGACTCTGTACATGGTTGACAGTGAAGttataatgtgatatttttatatttttaggtacattaatatgttttgtttttaatatgttcTATTATTTTACACCTAAGTACTGCCtgtgaatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466225 lncRNA upstream 84971 6944819 ~ 6949308 (+) True G393150
XR_004577471.1 lncRNA upstream 135267 6896993 ~ 6899012 (+) True LOC117596330
TU466182 lncRNA upstream 152753 6877171 ~ 6881526 (+) True G393116
XR_004577473.1 lncRNA upstream 171456 6854655 ~ 6862823 (+) True LOC117596334
TU466402 lncRNA downstream 13416 7055328 ~ 7061670 (+) True G393293
TU466410 lncRNA downstream 43885 7085797 ~ 7086015 (+) True G393301
XR_004577478.1 lncRNA downstream 91184 7133096 ~ 7151569 (+) True LOC113544421
XR_004577477.1 lncRNA downstream 113465 7155377 ~ 7163031 (+) True LOC117596340
TU466466 lncRNA downstream 135908 7177820 ~ 7245118 (+) True G393351
XM_026943225.2 mRNA upstream 1549 7000205 ~ 7032730 (+) True casq1b
XM_026942875.2 mRNA upstream 87556 6939707 ~ 6946723 (+) False zgc:92594
XM_026942963.2 mRNA downstream 259727 7301639 ~ 7306530 (+) True LOC113544270
XM_034301380.1 mRNA downstream 359457 7401369 ~ 7409804 (+) False si:ch211-63p21.1
XM_026942870.2 mRNA downstream 359460 7401372 ~ 7409804 (+) True si:ch211-63p21.1
XM_026942869.2 mRNA downstream 359462 7401374 ~ 7409804 (+) False si:ch211-63p21.1
XM_026943190.2 mRNA downstream 371284 7413196 ~ 7419635 (+) True LOC113544382
XR_004577472.1 other upstream 133339 6896993 ~ 6900940 (+) False LOC117596330
XR_003404500.2 other upstream 415597 6615959 ~ 6618682 (+) False LOC113544406
TU466595 other downstream 385706 7427618 ~ 7430910 (+) True G393467
TU467438 other downstream 1217016 8258928 ~ 8259302 (+) True G394251
trnal-cag_18 other downstream 1654285 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 2094045 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 3059100 10101012 ~ 10116924 (+) True agpat4

Expression Profile