RNA id: XM_034301286.1


Basic Information

Item Value
RNA id XM_034301286.1
length 1808
RNA type mRNA
GC content 0.50
exon number 13
gene id gatb
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 5965484 ~ 5979895 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tattgtttaatttcTAAAGAGTACTCAAATAAAACTCATTACATACCCaagattaaatgtttaattgtttcTATGTTGATTTAACttgttaataatatatatttttttgaaaactacatttcccatagCGCCAGTTTTCACAACacaaacatggccgcctccTGTTCGGGAAGCAGCGCTATACTGCACAAATGTGTTCCATTTAAAAGCATGTGTAATATGCATCAGTGTAGCGGTGTGTTTATTAGGAGAATATGGACGTCTGGGTCTAAATGCCAACTTCAGCCCAAATTACAGAGTAAAAGTGCTTCTCAGATGGTGGGCGTGGTTGCCTTGGAGATCCACGCACAGATTCAGGCCAAGTCAAAGCTGTTCTCCAGCTCACGTGTTGGATTCTCAGCCCCGCCCAATTCACACGTGTCGTTCTTCGATGCCTCGCTTCCCGGCACGCTTCCGATGGTGGGCGTGGTTGCCTTGGAGATCCACGCACAGATTCAGGCCAAGTCAAAACTGTTCTCCAGCTCACGTGTTGGATTCTCAGCCCCGCCCAATTCACACGTGTCGTTCTTCGATGCCTCGCTTCCCGGCACGCTTCCGGTTCTGAACAGGAGGTGTGTAGAGGCGGCTGTAATGACCGGTCTCGCCCTCAACTGCAAAATCAACACAAAGTCTCTTTTCGACAGGAAGCACTACTTTTACGCCGATCTGCCCGCAGGTTATCAGATCACTCAGCAGCGAGTGCCCATCGCAGTGAATGGATCTCTAAGCTTCAGTTATTTAGGTGGGAAGAAGAGGAGTGAGGTGATGACGAAGAgcgtgagagtgagacagatccAGCTGGAGCAGGACAGCGGCAAAAGTCTCCATGACGACCAGAGGAGCCGAACGCTCATCGACCTGAACCGTGCCGgtgtgggtCTGATGGAGGTGGTGATGGATCCTGATATGTGCTGTGGTGAAGAAGCAGCAGCTGCAGTACGAGAGCTTCAGCTCATCCTACAAACACTCGGAACCTGCCAGGGAAACATGGCTgAGGGACAGTTGCGAGTGGATGCTAACGTATCTGTCCATCATCCCGGAGAGCCGCTTGGCGTTCGCACCGAAGTGAAGAACATCAACAGCGCTCGGTTTGTTGCCAGGGCGATCGATTATGAGATCCAGAGGCAGATTGAGGTTCTGGAGAGTGGAGGAACAGTTCTGAATGAGACGAGGGCTTTTGACAGCAAAACCGGAATGACAGTGCCAATGAGAGATAAAGAGGGTTTACAAGACTACAGGTTCATGCCAGAGCCCAATCTTCCTCCTCTGTTTGTTTATGAGGGTGTGGACTCTGTGCCAGATGGCTTTGACCCCGCCCATGTGGTGGTGATTGACAGATTGAAGGCCCAGTTACCTGAGCTGCCCGGAGTGAAGAGGACGAGACTAATGGAGGAGTACGGCATCCTGCCAGAGCACAGCTTCACTCTGGTGaaTGAAGATGGACTGATGGATTTTTTCGAGAGTGTCGTCCAGAAGACAAAAATAGAACCGAGGAAGCTGATTGGCTGGGTGATAAAGGAGCTGATGGGTAACCTGAACCAGCAAAACCTAAAGGTTACACAGAGCCTGTGTCTCCCGAGGCTCTTGCGCAACTGCTGAATCTTCTCGATTCTGGTTTCATCTCATCCTCTGCCGCTAAAGTGGTATTCCAGGAAATGTGGAAGGCTCCGGAAAAGTGTGTGGagcagctggtgaaggaactGGATTTAGGGCTTATCAGTGATCGAGAGGAACTCATAAAGATCTGCCAGAGAGTGATGGATGCTCAT

Function

GO:

id name namespace
GO:0016874 ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465470 lncRNA upstream 64317 5882883 ~ 5901167 (+) True G392565
TU465466 lncRNA upstream 105797 5856294 ~ 5859687 (+) True G392562
TU465450 lncRNA upstream 109250 5831544 ~ 5856234 (+) False LOC113544283
TU465463 lncRNA upstream 150413 5814204 ~ 5815071 (+) True G392559
TU465441 lncRNA upstream 199279 5765901 ~ 5766205 (+) True G392541
TU465488 lncRNA downstream 32276 6009022 ~ 6028337 (+) True G392575
TU465532 lncRNA downstream 193218 6169964 ~ 6213340 (+) True G392610
TU465571 lncRNA downstream 391581 6368327 ~ 6376260 (+) True G392644
TU465606 lncRNA downstream 501504 6478250 ~ 6480082 (+) True G392679
TU465608 lncRNA downstream 504203 6480949 ~ 6481497 (+) True G392681
XM_034301182.1 mRNA upstream 54892 5831983 ~ 5910592 (+) True LOC113544283
XM_026943222.2 mRNA upstream 192231 5758941 ~ 5773253 (+) False tmem154
XM_026943116.2 mRNA downstream 32517 6009263 ~ 6026147 (+) False sh3d19
XM_026943118.2 mRNA downstream 32517 6009263 ~ 6026147 (+) False sh3d19
XM_026943115.2 mRNA downstream 32518 6009264 ~ 6026147 (+) True sh3d19
XM_034301240.1 mRNA downstream 32518 6009264 ~ 6026147 (+) False sh3d19
XM_026943117.2 mRNA downstream 32518 6009264 ~ 6026147 (+) False sh3d19
TU461743 other upstream 5015077 934929 ~ 950407 (+) False G389438
TU461983 other upstream 5160268 804360 ~ 805216 (+) True G389525
TU461981 other upstream 5164918 790488 ~ 800566 (+) False G389524
TU465523 other downstream 249611 6226357 ~ 6239070 (+) False lrba
TU465524 other downstream 249611 6226357 ~ 6239070 (+) False lrba
XR_004577479.1 other downstream 639213 6615959 ~ 6618682 (+) True LOC113544406
XR_003404500.2 other downstream 639213 6615959 ~ 6618682 (+) False LOC113544406
XR_003404501.2 other downstream 639213 6615959 ~ 6618682 (+) False LOC113544406