RNA id: XM_026942942.2


Basic Information

Item Value
RNA id XM_026942942.2
length 1731
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC113544250
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 9135957 ~ 9140298 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATCATTGCCTGACTTACCAAGCATTTTGTTGGTCTTGCTGCTCTGGTTTTTGTTAAATGTTCAATAATGTTAATCaatatacttttaaaattttcagcATCACATTTTTTCAAGTTATTAGAGACTAGTACCATCTGGCCAGGCATGGACCCAGCGAATGCTCGGAGTTTGCAAGCGCTGTTCCATGTCACCACCACTTTCTTGGGGTTCATACTCTCGGCCAGTAGCATACAGATGGACCCTGACTGCATAAAAGCAGTCAAGGAGTGGCCACACCCTGAGACTCGGAAACAACTTCAGCAGTTCTTGGGCTTCACAAACTTCTACCGGAAGTTCATCAGGGGGTACAGTACAGTCGCCGCGTCCCTTCACCAGCTCACCTCATCCCTCTGTACGTTCACCTGGTCGCCGGAGGCGGAGCAAGCCTTCCTTACACTTACAGACCTCTTCACAACAGCCCCTATCTTAACCCTGCCTGACCCGATGCTCCAATTCATCATGGAGGTCGACACCTCTTACCTCAGCATGGGGACCGTCCTGTCTCAGAGGTCCCCTAAGGACAACCAAGTGGGGTTATGGTGAATTTGTACTGGGAGGTGTTTGGGGAGAGGAGTAATGACTGAGTTGTGTTGTTCCATATATATTTGcgatctctttctctccctctctcagtgAGCTGAGTGTATGTGAGCAAAGCAAAACAAGAAGCAGCAAACAAGCTCAAAATTtgcagttatttttttctgaaaagcttTACATTACTTATATTTTTGGCCACTTGGCAGAATTCAGGCACAGCAGCATCAAATGGATTTTCCCAGGCTGCCCTACATATGTGGTCCCATAATGGAATGGATTTATTGATATCGCTTGAAGAAGGAGGATTAAGGATTTTGTCCTTGAACTATCTTTTGACTAATGAAGTGTAGAAGTATCATAGATATTAATTTATAGGTCTTATCCAGCTATAAGCTTTATtcaaaaattataaaaagacagacattaaatgtacattttgtcaGCGTCCGCCGGGGAAAAAAAGCTCTTCTATTACTTTGACTAAGCAATACTTTAGTCTGATCTTCTTAGTTTGATAATCCTTAGTACAAgtataagttttttttaacatttttgaacaTGTATAAATCTGTCAAAATAATACTCTACGCTGTGCACTGTTGCTGCTGACATACTATTGTTGAGTAATTTAGTAGCATAGTATTGGGAATTCctggggttttgtttttttattttatttatttatttatttttgattactACAGACTACTGTTATCTGGGTATGGTGTATTACTTTCTTTCATACAGGTGCAGAACATGGGTGCTACCTCTGAGCTGTATTCTTTGGGATGTTTGAATGCTTGAATCCTTTCTCAGATGACATGAGGCTTATAATGTACATGCTGTACATCATATAAAAGTACTTATATTGTACCACAGGGGTTCCTAAACTTTTTGGGAAAGCAACCCCAAATGGACataatgaattttctgtgactcCCAAGCCTTAACCACCCTGCAAGTCCCAGATTTGTaccatttgaacattttatgatGATAGTAACATACAGTGCCActagaaagtttgtgaaccctttacaattttctgtgtttctgcataaatttgacctgaaatgtgatcagaCCTTCATCTATGTCCTAAAACTAGATAAAGTGTTATCtagttataaaattaaattaaattaaattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467802 lncRNA upstream 127877 9007874 ~ 9008080 (+) True G394555
TU467774 lncRNA upstream 222873 8912880 ~ 8913084 (+) True G394527
TU467767 lncRNA upstream 283190 8852544 ~ 8852767 (+) True G394520
TU467590 lncRNA upstream 474727 8660696 ~ 8661230 (+) True G394373
TU467505 lncRNA upstream 669355 8466269 ~ 8466602 (+) True G394306
TU468001 lncRNA downstream 325230 9465528 ~ 9465728 (+) True G394747
TU468004 lncRNA downstream 329917 9470215 ~ 9471194 (+) True G394750
TU468011 lncRNA downstream 350762 9491060 ~ 9491274 (+) True G394757
TU468067 lncRNA downstream 424240 9564538 ~ 9570443 (+) True G394812
TU468074 lncRNA downstream 678722 9819020 ~ 9820350 (+) True G394813
XM_026943056.2 mRNA upstream 377581 8745817 ~ 8758376 (+) False phf3
XM_026943055.2 mRNA upstream 377581 8745817 ~ 8758376 (+) False phf3
XM_034301143.1 mRNA upstream 377581 8745817 ~ 8758376 (+) False phf3
XM_026943057.2 mRNA upstream 377581 8746024 ~ 8758376 (+) False phf3
XM_026943058.2 mRNA upstream 377581 8746024 ~ 8758376 (+) False phf3
XM_026943047.2 mRNA downstream 114364 9254662 ~ 9460105 (+) True adgrb3
XM_026943048.2 mRNA downstream 114364 9254662 ~ 9460105 (+) False adgrb3
XM_026943160.2 mRNA downstream 473030 9613328 ~ 9874174 (+) True LOC113544364
XM_026943161.2 mRNA downstream 473030 9613328 ~ 9873914 (+) False LOC113544364
XM_026942995.2 mRNA downstream 807443 9947741 ~ 10050093 (+) False fam135a
trnal-cag_18 other upstream 439678 8696197 ~ 8696279 (+) True trnal-cag_18
TU467438 other upstream 876655 8258928 ~ 8259302 (+) True G394251
TU466595 other upstream 1705047 7427618 ~ 7430910 (+) True G393467
XR_004577472.1 other upstream 2235017 6896993 ~ 6900940 (+) False LOC117596330
XR_004577480.1 other upstream 2517275 6615959 ~ 6618682 (+) False LOC113544406
TU468433 other downstream 960714 10101012 ~ 10116924 (+) True agpat4
XR_003404491.1 other downstream 1059025 10199323 ~ 10239199 (+) False LOC113544300
XR_004577523.1 other downstream 1059025 10199323 ~ 10224804 (+) False LOC113544300
TU468586 other downstream 1366292 10506590 ~ 10516369 (+) True G395242
TU468733 other downstream 1520648 10660946 ~ 10661703 (+) True G395365

Expression Profile