RNA id: XM_026942963.2


Basic Information

Item Value
RNA id XM_026942963.2
length 3773
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC113544270
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 7301639 ~ 7306530 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTCCATGGCACTGTTTATAAGACGGTTCATTCCACAATTCAGACTGTTGCCAAATTACTTCGGATGCTGTCTTACCTGACGACACTTCTTCATTACCCGAAGAGCGAAATGGACTTCTGAATAGCATCTTGAAGTGCACTTTGATCTATAACTCATAACTCAAGTTATGGCATCAACAGATCTATTGTTATCGAGATTGCTTGATTTGGTCAGATATGGACAGTGGAGTCAGAACGACGTTGTGGATTTGTTTACTGCCCTTGTGAAGCAAAACAGTGTCGGGGCAGTAAAGACTGATTTCTACACATGGATGGCAAAAATACTTTACAAAGTGGAAATTCACAAGATCAACAAGCTAGATTTATTATCGGACATTGAACCAAGCCAGTTTGTGGATAACATTGAAGATAGAATTAATGACTTtgttaaagaaacaaaagagaaaagcCTTGAAAAAATCATTGAGGAAAttgaagcagagagagacattGATCGGAATACTTTAAAAGATGTTAGAGacattgtgttgtctgtgtccTCGTCACCATCAGATCCTGTTTCAACACACCTTTACAATAAAAAGGAGAAATTAGTGAAGCTGTGTAAAGCGGTAGAAGATACCAAAGGATGGAAACCAAGGTCGACTCAGATGGTGAGCTGGTGCATCATGGTTCTTTCTGGTTCTAGCCAGTTAATCCAGGTTGGCACAGGCGAAGGAAAGTCATGCATAGTGGCCATGTTTGCTGCATATTGTGCCATGATGGGAGAGAGTGTGGACATTATCTCCAGTTCCCAGGTGCTTGCAGAGCGAGATGCTAAGGAGtggcttttattttataaaaaactgGGAATCACTGTGGATtacaatgtaaataaaacagaagtTGAAGACCTGAGGAAGTGTTATGCATGTCAAGTTGTCTACGGCACAACTGAGAGTTTTGCAGGAGACTGGTTAAGACACAGGTTCcaaagagaaaaagtgagaccTGGAAGACAGTTTCAATGTGTCATAGTAGATGAGGTGGACTCACTCATGTTGGACAAAGGTCTAGAAGTTGTCTACTTAAACAGTGAGATGCCTGTCATGGAGCCTCTGAACTTAATCTTAGCTAAGATTTGGTTTGTTGTCAACCACGCTGAAGATCTGGATGTAGAGAAGACACTAGATCTTATTCGTTCCTCACTAATGGCAGAGGATTCAGACATACTGCCATCACATAAATATCTAGAGATCCCTGCAGATACATCAAAGTTGAAGCACAATGAATTCCACATTCCAGGCTTTCTAGAACACATAAATGGGAGGCTAAAAATATGGATTGAAAATGCGTTTCTTGCCAAAACAATGACTTTAGGGCATGAATACATTCTGCACAAGGATGGTGTAGTTCCTGTAGATTACAGCTCTACAGGAGTCGTGCATAATGACATGAAATGGGGAGATGGACTTCAGCAATTCCTTGAAATGAAGCACCAAACCAGACTGTCAAATATGTGCGTGATAACAAATTTCAAGTCCAATGTAAATTTATTCAGGAGTTACAAACGGATTTATGGGCTCACAGGAACTTTGGGGAACCAAATTGAACTTGATTTGCTGCAGAAACTGTACCCTGGCATTAAAACTTGCAAAATCCCACCATTCAAACGCAGGAAACTTTACGAGAAGGATGGCATTGTAATTAATGATGAAAATGAGTGGGTACAAACAATTTGTAAGGTTGTTAATAAGACAGTGAACCCCACAGTCTACCGAGGCCCAAGAGCAGTCTTGGTCATCTGCAAAACTATTAAACGAGCACAAATAGTCTACAATGCCCTCTCAGAAACCATTTCAACAGACAAATTGAAACTGTACACAAATAACAATATGGACAATTCTAAGGTTACAGGTAAAGTGGTCACTGAAGGTTGTGTCATTGTTGCAACCAATCTGGCTGGTCGTGGGACAGACCTCAAAGTCTGTACTGAAGTAAATCTTTCAGGGGGTTTGTTTGTAGTGCAGACTTTCTTGCCCCTTAATATCCGTGTGGAACAACAAGCCTTTGGTCGAACTGCACGAGAAGGAAACCCTGGTTCCGCCCAGCTCATCATGTGCTCCACTCACTTCTCTGAGTCAGTCAAACTGATAAGGGCACTAAACTCACCTCTCTCCATGTTACTTACCCTTCTGAGGCAACTAAAAGCCACTGTAGCTGTGTCAGGATTCATCAAGAATAAGTTTGAAGAGACCCTCAAAATTTGTCAGGAAGACCCCAATGAAAAGAACTGTGAGGCAATGGTGAAAGAACTCAGGGACTTGCTAAACATCGAAAAGCCAAGTGGTTTAACTAACCTGGAGATGGAAAAAGAGTCTAGAGATTTAATTGTGCAAACAAGACTATcacattttcttaaaaatgacaTACCAAAAATCCTCAAAAAGGAGGAACTTTTTTCTGACTACCTTGACATGCTGGACACCATTTTCAAACAGTCTCGGGGTGGCGACTGTGAAGATATTGTGTCTTCACTTCATGAGTGCTGGGGTATGTGGCTTCTGATGAAGTTCAATGAGAATGAATCGACAGAAACATTAAGAAAGCAGTTACAGAAAGACTTGCAAAGTGCAAAGAAAAAATTGGATTGTAAACAGTCCCCTTCCTCTATGATCTACCATTATGTAAGGACTGGCAACACACTCCGTCACAAAGGATCCCTTGCAGACAGCATTGAGATGTACACAAGAGCCATTGAAAACAATCCTTGTTGGCCTGCCATTGCTTTGTACAATCGTGCATTGTCCATTCTGTCTAGAGCAAATAGTGGACATATTGCTCAGGCATTGGCAGATCTGAAGAAGGCTGAAGAGGCAGTAGACTCCTACATGAGAAAGTTGACATTGACTTTGATTTTTGTGAAAAACTCCAGCAAAGCTCCCAACATGACATCTGACATCTTGCTTACCAAGCAATTTAAAGCCAAGCACCTGGCACAGGATTTACTCAAAACAAATATCCAGAAAGCAATAGAAGCATTGCATATAGCTGAAAGTCGAGGTTATGATGTGCGAATAACAAAATACCCTGtgttactgctgatgctgaacCCCGTTGTTTTAAGAGCAGATGGAGTTATCGATGTGTGCCGAGAGATAATTAATCTCCGCTCACTGGGACTGGACACCATCTTCTCAGTAgaaactgtgttttctttttttaaacgtCTGAGTAAAATATTCAGTTAAAGCCTCAACTAAACTGTTTGAGAAACAGAACAGCAAAGAAAGATTTTCAGCATATATCTTTGTGGCATCCAGTAAGGAAGGAATGATGTATACTGAAGTGCTGAATTAAGTGCTATCATGAAGTATAACCTCCTTTTTTATAAACTGTTATTGCAAGTCTTCTTCAACTTACCATTTACAGATTAAATTTTTGGACAGTATGAATAACACTCCTGAGTACCTGCACTATAGTCTAACCCTtgtgtctccctctctgtggCTCTCTTGCATTTGTACCTTTTGGCAGCATTTAGTTTACTGTCAGCTCTTTTAACACATCTATGCTTGTGTTTTGTCTCAACTGTAAGTGTCTCAAATAAGTGGATGTCAGTGGAACTTTGGAGGTTTGTTCTGCAATGAATTCCAACCATTTTGATCATGATCACTGGGTAAAGATTTCTCTGGTAGGATTGCAACACTGACCATTATATACAACAAAGTTCAATGAAGAAGTCCTGAAGATtaataaactgtattttatctttgttttagACATTTTGTGTT

Function

GO: NA

KEGG:

id description
K03070 secA; preprotein translocase subunit SecA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466466 lncRNA upstream 56521 7177820 ~ 7245118 (+) True G393351
XR_004577477.1 lncRNA upstream 138608 7155377 ~ 7163031 (+) True LOC117596340
XR_004577478.1 lncRNA upstream 150070 7133096 ~ 7151569 (+) True LOC113544421
TU466410 lncRNA upstream 215624 7085797 ~ 7086015 (+) True G393301
TU466402 lncRNA upstream 239969 7055328 ~ 7061670 (+) True G393293
TU466517 lncRNA downstream 4283 7310813 ~ 7332101 (+) False G393394
TU466576 lncRNA downstream 61350 7367880 ~ 7371501 (+) True G393450
TU466613 lncRNA downstream 142104 7448634 ~ 7528555 (+) True G393484
TU467149 lncRNA downstream 615615 7922145 ~ 7922346 (+) True G393994
TU467152 lncRNA downstream 617416 7923946 ~ 7924834 (+) True G393997
XM_026942923.2 mRNA upstream 259727 7034279 ~ 7041912 (+) True LOC113544234
XM_026943225.2 mRNA upstream 268909 7000205 ~ 7032730 (+) True casq1b
XM_026942876.2 mRNA upstream 354916 6940267 ~ 6946723 (+) False zgc:92594
XM_034301380.1 mRNA downstream 94839 7401369 ~ 7409804 (+) False si:ch211-63p21.1
XM_026942870.2 mRNA downstream 94842 7401372 ~ 7409804 (+) True si:ch211-63p21.1
XM_026942869.2 mRNA downstream 94844 7401374 ~ 7409804 (+) False si:ch211-63p21.1
XM_026943190.2 mRNA downstream 106666 7413196 ~ 7419635 (+) True LOC113544382
XM_026943265.2 mRNA downstream 313570 7620100 ~ 7636047 (+) True LOC113544435
XR_004577472.1 other upstream 400699 6896993 ~ 6900940 (+) False LOC117596330
XR_003404500.2 other upstream 682957 6615959 ~ 6618682 (+) False LOC113544406
TU466595 other downstream 121088 7427618 ~ 7430910 (+) True G393467
TU467438 other downstream 952398 8258928 ~ 8259302 (+) True G394251
trnal-cag_18 other downstream 1389667 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 1829427 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 2794482 10101012 ~ 10116924 (+) True agpat4

Expression Profile