RNA id: XM_026942968.2


Basic Information

Item Value
RNA id XM_026942968.2
length 4582
RNA type mRNA
GC content 0.39
exon number 5
gene id sb:cb1081
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 6926560 ~ 6937373 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAATTATTGGATGAAAAAGTGGGGCTGTATTCTGCTATACCATTTAAATGACACCTGGGCACATTCAAACCACATTCAGAGGGCACACTCTACCTCCTAGCACACAGgcaagtgcttgtgtttaaagccGTGGTCTAAAGCCTACTGAAAGACTCTGCCGCGGACTcttctactgaagaaaaatccaACAACCTCGGAGACGTGTACTACGTGAAGcaAGGCACTTTGGAAGACACAGAATCAAAATCAATCAAGGGTTAACCTCAGAACTCTGGCCTGATGGCAAATTATACTGTTCCTTCTCAACGTGGTGGGCAAATTCCACTGAAGACTCAAGACCGAGACCATCTGTCATCCCTTGATGTTGTGTGGGCCAATAAATATGAGGGTGAAATGATCAATCCTACAAATGCCATGCAGATGGAATTCGAGTTTTACAAAGGTGCCCCACCCCAATGGCTGAACTTCTACTGGGCTGAACAAGAGAACTCCCCCTTTGTCAAGCGGGATCTGTATCAGGTACTACAAAGAAAGATCAGtgaaactaaaactaaaagatTGAGCATTGCTCATATTAACTTGTTCCATGAACCAGGCAGTGGAGGGTCCACCCTGGCCATGCAGGTACTATGGGACCTGAGAAAAGAGCTCAGGTGTGCCAAAGTAATAGATTCCACAACAGACAGAAAGGCAATTGCACAGCAAGTGCTGCGGTTATTTAGAGCAGGTGGTTCAGAAAACCAAAATACTGTTCTCCTTCTTCTAGACAATAAGTACACAAGTGACGATCCTTCATTTCGAGAAAACCTTGAAGAAAACCTATGTGATGAAATTAAGATGAACAATATCACTACTACAATCCCTGTGGTCATCATTTTAAACTGTCTCCGCCAGACAGACTTGACTGACAGAACAGAAAATGTAATACTGTCCTCAAGCCTTTCAGAGGAAGAGCAAGACAATTTTAAGAGAAAACAGTCTGACATCATTCAAATACATGGAAACAGACATACCCAACTTTATGCCTTTAACATTATGCTGAGAAATTACGATCCATCTTATGTTACAGAGGTCTGCAGAATTCTTCTgccattaaagaaaaaaaaggaggtcCCGCAAAGAACAACTTCTGGCATTTTTGGCACTGATTAATCATATGTCCCCAGCTCTGATCTCCCCCATGATCTTTGTCAGATGTTCATTGAGAGGCAAGTTAATAAGCTTGTCAATTTATCTTTGGAGCAATATATGCAGCCCTTCACAGACTTTCTGGTCATATTCTCAATGAAAGAAGAAGAGGACAGAAGTGAGAACACACGTGTACGAATGGTACATCCCATGATTGCTCATGAATGTCTAAGATTGTTAGCTGAAGCTGGTGTAACCAGAAGTGACACTACATTGAAGCTACTGACAGAACTGTGCGGAGATGACATGCcgccatgtttggtgaaaactattaaaaaattaCTCACAAAGCGAGAATCTAGGCTGCAAGAACAGGAGAAATTCTCCAGAGTGAGCCTAGATCAATTCTCCAAACTGATCCTAGATATAAAAcgagaagaaaaaacatcctTCTGTGTTGCAGTATTGAAAATGGCCTTGAAGAAATTTACAGCAGATCCATTTTATCCACAAGCTCTTGCCCGTTTCTATTACATTGAGAGGAAAGATTATGAAAAAGCTAAATATTGGGCTGAAATGGCGATTATGAGGGATGAAAGAAACTCCTTTATCAGAGACACCCTTGGACAAGTGCATAAAAACTGCCTAAAAAATCTTGCCTGTAATGAAGAACCCTTGAAAAACCCTGAAGCATATGCTAGAAGAATCTTGCATCATGGAAAAAAAGCAACTGAGGCTTTTAAAGCTGAAGAAGAAGTTGCTGTGGCAGAGGAGGCACCAGAGTTGAAAGAGGATGTCCTGATAAACACATCTACCATCTTCAACAACCGGGGTATCTTCGGCTACATGCAAGtggcaaaaataatttttgaccGTCTCACAGGCTTTCACGATGAATGGGCCAAGGTACTTACAAAGGAAATATCCCCACACCGTTTTCTCAGCTCTTACGGAAGTGGTAAATGTGAGAAGTATAAGAGTCTCATTACAAGTCTAAGAGATGAAGTTGAAGAAAAGTTTGAATTTTTTGAATGGTATCTCCTTTACTCAAAGCCAAGCAGCCACAAAGATGAACCCAAATACTTTAGGCCAGAAGTTGATGCATGCTACAAGAAATTTGTAACACAATCCAAACAGAACAAATCAGCATTTCAGATCCTCAAGGAAAGAAAGGCCAGCACATTTGCAGGATTACTGCACACACAAGACCAAGACACTGAACTGGAACTGATCACTGAACAATGGAAAGAAATTTACTTGCATTCACAGAGTGATGCCAATATTATACAAAACTACATTGCTGCAAATGTCATGTTAAGTCAAAGGAATGGCACATCCACAGCACTCAGACCACTGGGAGAACTTCAGGAAATGCTACACAATCTCTGGACAGAACAGAAAGATAGAAGAAGTCCAGAGTTCTACCTCTTGGTCCTTCTGCTTTTTTGGCCTGATGAACAACAGGGCAGACACAACAGTCTGGACGTATCTGAATGTGTTAGATACATGCATCATTCCTTTGAAAGAACATACAAAAATTACCTACGCTCTCGTTACCTGGttcctctcttcttcctcactgAAGACCACGGACTACGGAGATTTATCCATATATCATGCCTAGAGGAAACTTCAACTGACATTCTTACCAAAGGACGTGAAAGAGCTGAAATTCCGAAACTACGACGTGTGAGAGGAGAGGTGAGAAATTATAAGGTTTTTGCTGTAGAAGGATCTGAGAAGATTGAGGTTTCTCCCAATCATCCAGCCAGTGTGCGTGGTCAAGGAAAGGTTTCTTTCTACCTTGCCTTTAACATCAAGGGACCTGTGGCTTACAACATCAGATATGAGCAATAAAGCTGAAGATAAATACATTAGATATGAGTGTGAGCTCCAGTTAAACAGTAGGGTTCAATGAATACACAGAGATTGGATGAATACTACCTTTATGTAAGATTAATCTCCATtaagtatgaaagtaaaaacaggaTTCTAAACTTTCTACAAATATATCATCACTGGTGTAGGGTCAATTTAATCAATTTTACATAATATATTGGTTTTAGTAATGTTCTTCATAATGGGTCAGCTTTTGCTGGACTACAGTGTCAACTACACATGATCTGAGacactgcttttatttaaatagatcTCTGATGGGATATAGAATTTGACTAACCTTCCGTATCTTACTGCTAGAAAAGGCAAATACGATAAAATAGTTTATGGTTTAGTATAAATACAGTCTGGAACATATTTCGAGTTGACAAGTGCAAAcgttatgtaaatatttactcAGGGAacgttcctcgtattcagacgCGGGTTAAGCTTAAGTCGACTTTCTGGGTGCGCCATTCAGATTATACAAAATACTTGTGCGTAGCTCCAAGATAGCCAGAATTTTCTTGAATAAAGGTGTCCAAGATAAAATTTTTGCCCCATGAGAGCAATGTCTCCAATTATGATGCTGTCTCCTTCAGTGTCctctgtgtggggaaaaaaaagcacttttgtGCAGACTTTAAAAGGACAatgctattaattaattaataatgtcatatttGAGTGTACTTACAGGATAAACCTTACAGTACATTTCAGTGTGATGCATAATgcttacatcacactgtctggATCATTCAAGGTCAGATTCATTGGTAACTGAGACGCCTCCATTTTTTGCACACGCATAAGTCAACTCTGAATCCTTCATTCAGTATTTAACTGCACACTTTGTCATCCATTTCCTGCACATTCATTACACGAATATAATTTCTTCATTTATATGTATACGCTAATACTAAAAGCAGTGACACCTACATGAAATGACATGACTTTAGCTAACACAATCCTTGTGTCTACGCAATTAATCATAAATGGTTTGGCATCAATAACTTGGGTACACCCATTTGGGGAGTCAGCCATTTTGCAACCAGACATCACTATTCTAAGCTAACCAGCATGGCAGTCCAGCAAAACTACCTCtagataatgagataataatcAGGTTTACTGCTCAGACAGTAGCgatgtactgtgtatatatatattttttatttttgttattgttgttcttTTGCTCTGTCATCTGAAATATGCGAATCTTATTCTTATTTCAATAGATAAGTATGTACTATTAGCATGTTAAAGAGTCAGTGGAGGGTCTTATGTGAAtgataggatttttttttttttttgttttcagattcCATTGAGAGTTTAGATAAATTACTATATTCTTTGAAACAGTGCATGCTATTAAATATACTATTGTAATGATgcattgttataaataaaaaaaatcactttttgcctctatagtacacagttatagaagggaattttTTTATGGGATTATGGGATCTAAAggattcttcctcatgttgtgttagggagtttttccttgccaccgtcacctctggcttgctcattagggataaatttataaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577471.1 lncRNA upstream 27548 6896993 ~ 6899012 (+) True LOC117596330
TU466210 lncRNA upstream 31089 6843423 ~ 6895471 (+) True G393140
TU466182 lncRNA upstream 45034 6877171 ~ 6881526 (+) True G393116
XR_004577473.1 lncRNA upstream 63737 6854655 ~ 6862823 (+) True LOC117596334
XR_004577474.1 lncRNA upstream 63737 6854655 ~ 6862823 (+) False LOC117596334
TU466225 lncRNA downstream 7446 6944819 ~ 6949308 (+) True G393150
TU466402 lncRNA downstream 117955 7055328 ~ 7061670 (+) True G393293
TU466410 lncRNA downstream 148424 7085797 ~ 7086015 (+) True G393301
XR_004577478.1 lncRNA downstream 195723 7133096 ~ 7151569 (+) True LOC113544421
XR_004577477.1 lncRNA downstream 218004 7155377 ~ 7163031 (+) True LOC117596340
XM_034301216.1 mRNA upstream 150216 6762469 ~ 6776344 (+) True supt16h
XM_026943274.2 mRNA upstream 166656 6746669 ~ 6759904 (+) False tox4b
XM_026943275.2 mRNA upstream 166656 6746669 ~ 6759904 (+) False tox4b
XM_034301347.1 mRNA upstream 166656 6746673 ~ 6759904 (+) True tox4b
XM_034301348.1 mRNA upstream 166656 6746673 ~ 6759904 (+) False tox4b
XM_026942875.2 mRNA downstream 2334 6939707 ~ 6946723 (+) False zgc:92594
XM_026942876.2 mRNA downstream 2894 6940267 ~ 6946723 (+) False zgc:92594
XM_026942877.2 mRNA downstream 2894 6940267 ~ 6946723 (+) False zgc:92594
XM_026942874.2 mRNA downstream 3103 6940476 ~ 6946723 (+) False zgc:92594
XM_026942873.2 mRNA downstream 3104 6940477 ~ 6946723 (+) True zgc:92594
XR_004577472.1 other upstream 25620 6896993 ~ 6900940 (+) False LOC117596330
XR_004577479.1 other upstream 307878 6615959 ~ 6618682 (+) True LOC113544406
TU466595 other downstream 490245 7427618 ~ 7430910 (+) True G393467
TU467438 other downstream 1321555 8258928 ~ 8259302 (+) True G394251
trnal-cag_18 other downstream 1758824 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 2198584 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 3163639 10101012 ~ 10116924 (+) True agpat4

Expression Profile