RNA id: XM_034301143.1


Basic Information

Item Value
RNA id XM_034301143.1
length 5635
RNA type mRNA
GC content 0.46
exon number 16
gene id phf3
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 8745817 ~ 8758376 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTACTGGCCACAGGCTGCGTTGCAGGTGGCTGTTGTGTTGTCGTGCAGGGGAAGGGGAAGTGCAGGCTACTTACTGCTACATCTCAAGTGAGAATGTAAACATCGGAGCATAGTGTGACTGAAATTACTGACAACTTCAAATATGCGCTGGCTTTTGGACAATAAGTGATCAGTTGGAAGACTCCCTGCTCCTTGGCCAGAACCTGGAATGTGAAGCAAGTGATGAGTTTGCATCGAGCCACAGCCTGCCAGGAGATTCGCTCAAGAACATGCTCAGTGACAAGGATCCTATGTTTGGATCTGCCAGCGCACAGTTTCATCTCTTGGAAAATGATGATGCTAACTTTCAGCTCTCCAGCTCATTAGACAATGACATGAGTGCTTCAGGCTTCAGCCAGACTTGTGCTGATGGGGACGAGACTCCGGCCAAGTTTCTCCGAGGCAGGAGGAAAGGTGCCACTCAGCTACAGAGGAAGCAAACCGCCTTTTCATCTAGAGGTCGAGGTAGAGGTGGACAGACAAGGCGCCCCGGTCCATTTAGAGGAGTTTCCACTGAAGCGCTTTGCCAAAAATCTGGCCGGACATCTGGAGTAAAGGATGACGAAGAACCAGGATCAAGTAGCATCTCAACTGAGGAGATGCGCATGGAGAAACGGGAAGACTTGCTGAGACGTCGGTTTAACGTCCATGAAGTTGACCCATCGATGAATCCTGTGGTCGTGTTGAGGCGTTTAACAGTGACAGTAGGGGGCTACAAAATTGAACTGTTGCCTGGACCTTCTCACACTTCTGGATCATTTAATACAGGCACTCTTCAGTCTCTGAGCTTCCAGGACGATTCCCTGACCACTGAAAGCAATGGGTTCGACCTGGGACAGGCCCAGGCTTTTGATGTGCATTCAGCCCCAGACGTTGTTAAAGAGCTTAATGTCATTGAGCGTGGAGCTAATGAAATGCCAATGGATTTAGGGCCATATGTAAATCCGAATGAAGTGCAACACACCAACGGTGCGAAAGAAGTAACCACGGACACCAAAACGGTTGACCAAAACGATGCTGAAAAGCTGAGTGAtgacaaatcagaaaaaaaaaatgtcaagacAGATAAAATTGCTGCTAAAAAGCTCATGAAACCCAAGCAGCCACTGGGTATAACCAAAAACAAGCACCTTAGCAGAGCAGGCATCCTGCAGAAGGGATCGAAGCTTCACAAACCACAAGATAAAAAGGTGCAAAAAGCTACAGCAGAAAATCAACAACACATCAAAAGCAAGCCAAATAGCATAGGCCTAAAACGGCCAGCTCTGTCTCTCAAACCTAAACAAGCCTTGAAACCACAAAAGGAACAAGTCTGTGATCCGGTGAAACATAATGTCAGCCCCTCTGTTCCATGCTCTCCCACAATAAATAGAAAGGTGTCCTCTGATTCCAGTCCTGGTACTAAAGCAGTTATGAATAAATCTCCTTCTTCGGtaaagaaaccacaaaatccATCACCAGCAGGGATCAAACAAAGTCAATCAGTGAAGGATGGCCCAACAGAGGAAGAacaggagaaaatgaaaatcaagaaaccagaaaagatcctgcagagacagagaagcagaagcagcagaagcATTTCTATAGATGAACCTGAGCTATTCATCCCTGATAATGCTCCTGTTGTGAAGAAGGGGCCTGCAGAGGGGGAACCTACACCTGCTTCTGAAAATGAGACAGCGTGGGATTCAAGCAAACAATGTGGACTATGTAATAAACCACACAGCAATAGATTTATGGTAGGCTGTGGGCGCTGTGATGACTGGTTCCATGGCGACTGTGTTGGACTGGACCTGGCTAAAGTACAACAAATGGAAAAGGATGACCAGGAGTTTGTCTGTCTTAAATGCTGTGCCGATGAAGTTGGGAAAGGCAACACTGAGAATACAGACAACAATTCAGCACCAGATCAGAAACAGGGACCCGAAGCATCAGTCACAGCTGGTGGAATCCGGCCCTATAGGAAGGACTCAGCAGAAAGACGATCATCAGGGGATTCAGCAATGAAAACTGGGTCAACTGCGAAGCATGAGGTGAAGAAGGCTAAAATTTCTCTTCCAAGCTTAAAGAAGCCATCCACTGGACAAATCAGGAGGAGTGTCCGAGACTCACTAGAGGAGATTCTCCTGAAAAGGCTGAAGGAATCAGACTTGAAGATTTCAAAAGAGAAGCCAGCTGAATTGGCTAAAGGTACAGAAAAAGAGCTTTTTGCCCTCTTCCAAGGTGTCGACAGCAAGTACAAGAACAAATACCGAAGCTTGATGTTCAATCTCAGAGACACAAAGAATAATGTGTTATTCAAACGTGTTCTCAAAGGGGAGATTCCTCCTAGAGGTTTGGTTCGTATGAGTGCGGAAGAATTAGCCTCCAAGGAACTGGCTGCATGGCGACAACGGGAGAATCGACATACAATTGAAATGATTGAGAAAGAACAGCGGGAAGCGGAGAGGCGACCAGTcaccaaaatcacacacaaaggGGAGATTGAAATTGAGAACCAAGAACCTGCAAAAGCCCCTGAGGCTTTGCCTGATGCTGCCCCTAAAGTTATTGAGGTTTCTGAGGAAAAAACTCCAGAATCAAAGGCAGAAAGCCCCAAGAAGGCTAAAGATACAACAAGCTTGCACAAGTCTCATCTTTTTGATCTTCACTGCAAGATCTGCACAGGCCGAATGGCTCCACCAGTGGAGGAGGCAACCACTAAGCCTGTCAAAGTGGCCACAACTGTCATTAGAAGGCAGTCTACACTTACAGAAGGAGAGGGCCATGAACCCACACCCACATCTCCACCTATTGCTCCATCGGCCCTGGTGGATGACTTGTCTCTGAGAGCGATGGAAGAAGGCCTTCTTAACTTCCCTGCTTATGAGTCAAGGTTAGAAAGTGCTAGCAGTAAAGAAGATACAGTTGCATTCCTTGCTGGTTTAGAAATGTTATGGAATGGATATATAGACATGCCATCTGTAGCTCGGTACCTCACAAAAGCTTACCCAGTCTCTGGAATTTTGGACCACCTATCTGAGGATCTGCCAGACACAATCCAGGTTGGTGGAAGGATCTCTCCCCAAACAGTCTGGGACTATGTGGAGAAAATTCGTGCCTCTGGTACAAAGGAAATATGTGTAATTCGCTTCACTCCAGACACAGAGGAAGATGAGATCTCGTACACCTTGCTGTATGCCTATTTCAGTAGTCGCAGACGATACGGTGTTGTTGCCAACAACCGCAAACAAGTTAAAGACATGTATCTTATTCCTCTTGGCTCCAGTGAAAAAATCCCACATCAGATTGTTCCATTTGATGGCCCAGGGTTAGAGACTAACCGACCAAACCTTCTCTTGGGTCTAATCATTCGCCAGAGGCCCAAAAGGGACTTTGGGGTCCTCCTACCAAGCGAGGCTAGTGAACCTCAAAATTTCTTGGTGGAGAACAAACCTCAGGTAGACCCCATCCAGAAAGCTGTGGTGGCCCGAGATGAGGAGAAGGACTTCATAAGCAGTCTTGGACGGATACAGAAAAAGGACAGTGCAAATCTTAGCAAATCTGCAGTGACTGAATCTCGGTTAGACATCGAAGATGAGGAAAATGTCTCGTTGCGTTTCCTCCCGGGCGTGCTAAAACAGCCCACGTCTGAGAAGGCTACACCGGTGGTTGATGAAGTAAAGAACATAACTAGTGGTGCAGTAAGTCAGACATCTAGCTCTGATAGTGACACCTCAGGACATGTCACTCCTAAAACACCCACCACCCCCAGACTGGACCGTTTCATTATCAAAAAGAAAGAGCCGAAATCTGTCGAGATGAAACAAGAGCCATCCAGCTCAAATGCAGAGATCACAAGTTcacaaggaaaagaaaaagaaggtgGACCACAGAGTGGAGTTGTATTATCTCTAAAGGATAAACCAGGAGATGTATCAACAGAAACTTTCCTCTCTAGCCTTTCCACAGTTCAGCCTAGGACTGAACCTAACACCACTGAAACAAAAAGAGATACCATACCACCAAGCACACAGCCCAGTCAAGACATAAACCTGTCTCCTGTATCTGCTTCAGCTGCATCTACAGATAGCACTAATGATACCACTGAAGATGTTTCCAAGCACAAAACTGTGGAAATTCCAACTACGACTTTAAAACTATCCACAGCTGGCATTTTGAAAAAGACTGATGTGTCAGAACCTGTTGATGCGAAGCAGAATAAAGACGTGCCACAACCAAAAGTCACCCAGACTACACCTTCAGAAGAGTCATCAGTTACCCAGTCTGCACCTTCACAACCATCATCAACAACAGAGTCTGCACAGCCACCATCAGAGTTTAAAAGTGTTGAAGATATCCAGACCATCACCACTATTTCTTTGTCTGGAAAAAATGATGGCCTCAAGCAGTCAAGACAACGTCTTCTAAGCCCCACTCCTTTTAATACTGCAAGTCATGGGCCTCCACCAGCTACTTTTCCTCCTTATCACACCGCACCAGTTGACCATGCTTACCACCCTGGACCAGTGCCCACCTACCCACCCCAATCTAACCCTGCACCATTTATACCCCTGCATCAGCAGGCCCCTCCCCCGTTTAGCTaccctccacctccacctccacctcctccaatGATGTTTCCCCAGAATGATCCTCAAAATCAAATGCATGCCCCACCTTGGGCTCAGGCAGTGCCTCCTCCGGCTTGTTTTCCACAGGCTGTCCCAGACGCAGTGGCTGGGCCTCCACAGTCATATACAACTCCAAGATTCCCTGATTCCTCCATGCTTAACCTGCCACCCTTGAACAAGAGTGATCAGGGCTCCGAGCTGTGGGACAGGAAGTCCAGACCTTTGGCCGATCCCTTCAAAAAGGATGACCGAGACCACTATGGGAGGTACAGGCACAAGAGCCAACACTATGAGCGAGAGAGGCACAAGGCCAGGAGTCGGAGCCGAAGCCGAAGCCGAAGCAAGAGCAGGAGTCGCAGCAGGAGTCGAAGCCGGAGCAGGCACAGACACAAGAGCAAACACTCGCGAGAGGACAGGCACGGggagaggaggaaagagagacatCACAGCAGTCAccacagggacagggacagggacaaaCATAGACGGGACTCTGATCATGAAAAACATCGGAGAGACTCAAGAGATGGGCACTCATGATCTTCATGCTCAACCTAGTTACACCCATTCAACATCACTGACCAGACAtgttctttttgtattttactgCATAGTAAGAagttatttataacatttaaaagcagctttttatgagtgtacttttacatttttagttGTTCTTGGTTTGGAttaaatttctttgttttaaagtttaattaacaTCAGAACCAGAAGTCTCAGTCAGAACCAGGTTttcatattattaattaaaaattaatgccAAGAAGAGAACGTTATTTCCTCTGCATTTTTACAATATCTTCAACATTTTCTATTTGCATTGGATGACAATGTGTCTGTACATTTTGGCTTATCAAACAGTAGAGATAACATGCTCTCTGCACATTGTGTTTATGTACAGTTCAGAAATTCTTTTtattgttgatttaaaaaaaataaaacaaactttattaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467590 lncRNA upstream 84587 8660696 ~ 8661230 (+) True G394373
TU467505 lncRNA upstream 279215 8466269 ~ 8466602 (+) True G394306
TU467489 lncRNA upstream 305380 8420682 ~ 8440437 (+) True G394291
TU467449 lncRNA upstream 460478 8285006 ~ 8285339 (+) True G394262
TU467447 lncRNA upstream 465613 8279534 ~ 8280204 (+) True G394260
TU467767 lncRNA downstream 94168 8852544 ~ 8852767 (+) True G394520
TU467774 lncRNA downstream 154504 8912880 ~ 8913084 (+) True G394527
TU467802 lncRNA downstream 249498 9007874 ~ 9008080 (+) True G394555
TU468001 lncRNA downstream 707152 9465528 ~ 9465728 (+) True G394747
TU468004 lncRNA downstream 711839 9470215 ~ 9471194 (+) True G394750
XM_026943122.2 mRNA upstream 59892 8662244 ~ 8685925 (+) True nvl
XM_026943101.2 mRNA upstream 122424 8609467 ~ 8623393 (+) True slc12a10.1
XM_034301390.1 mRNA upstream 162727 8496076 ~ 8583090 (+) False LOC113544387
XM_034301389.1 mRNA upstream 162727 8521076 ~ 8583090 (+) True LOC113544387
XM_026942941.2 mRNA upstream 259282 8474884 ~ 8486535 (+) True LOC113544248
XM_026942942.2 mRNA downstream 377581 9135957 ~ 9140298 (+) True LOC113544250
XM_026943047.2 mRNA downstream 496286 9254662 ~ 9460105 (+) True adgrb3
XM_026943048.2 mRNA downstream 496286 9254662 ~ 9460105 (+) False adgrb3
XM_026943160.2 mRNA downstream 854952 9613328 ~ 9874174 (+) True LOC113544364
XM_026943161.2 mRNA downstream 854952 9613328 ~ 9873914 (+) False LOC113544364
trnal-cag_18 other upstream 49538 8696197 ~ 8696279 (+) True trnal-cag_18
TU467438 other upstream 486515 8258928 ~ 8259302 (+) True G394251
TU466595 other upstream 1314907 7427618 ~ 7430910 (+) True G393467
XR_004577472.1 other upstream 1844877 6896993 ~ 6900940 (+) False LOC117596330
XR_004577480.1 other upstream 2127135 6615959 ~ 6618682 (+) False LOC113544406
XR_003404490.2 other downstream 377581 9135957 ~ 9137421 (+) False LOC113544250
TU468433 other downstream 1342636 10101012 ~ 10116924 (+) True agpat4
XR_003404491.1 other downstream 1440947 10199323 ~ 10239199 (+) False LOC113544300
XR_004577523.1 other downstream 1440947 10199323 ~ 10224804 (+) False LOC113544300
TU468586 other downstream 1748214 10506590 ~ 10516369 (+) True G395242

Expression Profile