RNA id: XM_026943063.2


Basic Information

Item Value
RNA id XM_026943063.2
length 4456
RNA type mRNA
GC content 0.45
exon number 26
gene id LOC113544317
representative False

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 6646391 ~ 6671237 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAATTCAGCAACCTCACTGTATTGTATTGAAGGCGTTGTTTAACTGGTTTGACATGCTTGGGTGAGGAGAAATGGAACAGCACACTATTTCTGGAGCATTCCTTTACATCGAGGTAACAAAGAGACTACAGTAAATGAGAAAGtcagagaacctggagcaaaGACGACACTCGAAATAGGAAAAGGTCTGAAGTGTCCCTGTCCAAGATTTACCAAAGAAGACCAACATGTGGTCTGCAATTTTTCACTTCAGTTGGAAGTTGATGGAGCATCCTGATGCACCTTGATCATGGCCCAAAGCAAATGGAGGATTTGACCATCCCGGTATATGTAGACATTTTTAATGCAATCTATTTATTGTATCTATTTATCTGCATCTGACGAAAATTAGTATAAGAAAACAGAAAGGACTCTAAAAGACAGATTTTGATCTCCACTGGGTCACTATGCAGGATGACTCACATGATTGCGTTGAAATGAACACCAAAAATCCTGAGGACTTGTCACAGCAAAACGGGTATATAAACCAAATCAGAAAACAGACTAAGCatgaagaaatacagaaagacaATAATTCTGCCCAAGATGGGAATAAACAACCCAATGGTAATGGAATCGGACAGCTCAACATTGAGCTAGGAATTGCTAAGAAAGAGAACACCCCAGAACCTCTTCAAGTATGCACATCCTTTAAGACATCCAATGCAACCCCAAACGGCCTCCCATACTCATCACTTCCTGAAGCCAGTGTGGAAGACAACACTACCAACGGTGTAGGGAACTGCTTACAATCCCGCAGAACTGATCATGATTGTTCAGAACCAGAGCCAGAGGTCACGGGAGTCCCTGAGCGTCAGAGTGTGAGAATTCGGCGCAATGCTGCCACCGGAGCAAGTCGCTGTTACCAGACTATGCGGCTGGGATTTCTGCAGTGCCTGGAGGACACCCCGTTTGTGGTACCAGGCCTGGTATTGACCATCTTGTTTTGTGTGACCATCATCGTCGTCATTGCTGCTACTAGCAGACATATCACTGGTCATGTAGGAGCAttagcagtggtgtgtgttgtgctctGTCTTTGTGTCCTGCTGTTGGTGTGTTTGCCGTGCCTGCCCACCTTGCGTAGGTGTGAACAGATGCTTGCGCTCTCCATCTGGTTCACACTATTCATCACTGCCATTGTCTTCATCTTCACCGACAAAGTCACCGCATGGGAACAAgTGgcgttttttctctttctttctctatcagTATACACAATCTTACCTCTTACTTTCTGGTGGGCTATGATCTTTGGTATCGGAGCCAGTGTGTGTCACATCATCATTATCAGCGTCAGTGTGTCTGCTAGCCGCCCTAGGCAACGTGACGTGGCAGTGCAGctggtAGCAAATGCagtgctgtttgtgtgtataaattGCGTTGGACTTTTTCACCTCTGGCTTATTGAGAATGCAAGAAGAAAGTCCACCATGAGCCGAGAAACCTTTAGCTACAACCGCTCCAAACGAGCCACACAGAAGCGTGATCAGGAACACCTCCTCCTGTCCGTGCTGCCCCGATACATTGCCATGGAGCTCAAAGGCGAGGTTGTCAAAGGTCTGTCAAGAACATTCGCAGGAGTCGACAATAAGCCAAACTTCCACAATTTATATGTCAAGCAGCACAAAGACGTCAGCATTCTGTATGCAGACATTGTAGGTTTCACCAGTCTGGCCAGCACCTGCACTCCCGAGGAACTGGTCGTTGTCCTTAACAAACTCTTCGGCAAGTTTGATGACATTGCCAAGAAAAATGAGTGTCTGCGTATCAAGATCCTGGGTGACTGCTACTACTGCGTTTCAGGCCTTCCAGATCCAATCCCTCACCATGCACGCAACTGTGTACAGATGGGACTAGATATGTGCACTGCCATAAATAAGCTGAGAGAGGCGACAGGTGTCGACATCAGCATGAGGGTTGGCGTACACTCAGGAAACGTACTTTGTGGGGTAATTGGCTTGCTCAAGTGGCAGTATGATGTCTGGTCAAATGACGTAACGCTAGCCAATCGCATGGAGTCTGGAGGTGTCCCTGGAAGGGTTCACATTACAGAGGAGACCCTTGGAAACTTAGGCGGGGCGTACCAAGTTGAGGAGGGGAACGGAGCCAGTCGGGATTCTGCTTTGGAGGGCAGGAAGACATACCTAGTGATTGACCCCAACCCACAGAACAGCACTGATGAAAAACCAAAGaCCAACATCCTGATGATGAATGGTAGACCAAAGCAGCGGGCTTCAGTGAGAATGTCTCAGTATCTACAGTCCTGGAAGAGCATCAACCCCTTTTCAGAGCTCAATCGACCAGAGGACTCTATCGCTGCCCCACTCAGCCCATCGAATAACTTCAGTCAGTCACAGGGGGACACCGAATCAGTAAATCATCAGCCATATACTTCCTACCAAGAAAGCAGgCTTTCATCTGTGTCAGAAAATGGGTCAATGGCGTCATTGGACCCACTAGATGCGTCAGGATCAAAAACCAAGAAACTCAACTGGTTGACACTGTTTTTCAGTGATATAAACATGGAAAAGCAGTATCAGCTGAGCGAGGTAAAGGATATCCATCAGTCTGCGGCCTGTCTGGCTCTTATCTTCACTGCCATATTCACTGTACAGATGCTTACCTCACAAAAAAATACTCCCCTGGCGATATCATATGGAGTCACCTTTCCTATCCAGTTGCTGATACTGCTGGTGATCAGCATGGGATTCCTAAAGcaaTTTAACTCTAAGATCCCACCTAGTATGCAATGGTTGTCATTACTGCCATATGGAGTAGCCACCAAAGTGTTGCTGAGACTACTCCTGGTCTTCACCTGTCTCCTCATCACACTACTCATGGCCATCCTGAACCTAgtTTTTATTCCAGGTGATAACTGCCTAAACTCCACCAACAATGCCACCACACTGGATAATCTAAACCTTTATTCTGTACCGtATTATCTGTATTGCTGTTTATTGGCAATGCTGGGGGTGGTGGTGTTTGTAcgagtgtgtttttctgttaaaCTCTTCCTCCTCACACTTGCACTAGTTGTCTACCTTGCTCTCTTCCTCTACGTGTATGCGCCACGTTCTGATTGCTACATGCAGCAACTCTACAACGTTTCCAACAATCCTGGAGTTCTAAAGGAGCCCAAGATCATGTCAGGGGTTTGGCTCTGCATTTTCTACTTCACCTCTCTAATTCTTGCCCGACAGGACGAGCTGGCCTGTCGAGTCGAGTTCCTTCTAGAGAAGTGTTTTGAGAAAGAGCGTGAGGAGATGGAGATGACAGAAAATATCAACAAGCTCCTCCTCGAAAATCTGCtgccttgtcatgttaccaactTCTTTATTGGCAAAAATGTTCCCAATCAGGATTTGTACAGTCAGTCTTGTGAAGCTGTGTGCGTGATGTTTGCCTCAGTGCCTGAGTTTAAGGAATTCTACACAGAGAGCAGTGTAAATGGAGATGGCCTGGAGTGTCTGAGATTCCTCAACGAAATCATCACAGACTTTGATGAGCTCCTCAGCAAGCCCAAGTTCAATGTAGTTGAGAAAATTAAGACTATTGGCACCACATACATGGCTGCTGCTGGACTGACCAATCCCACTACAGGAGAGGAGCGAAAGGACAGTGACGCGTGCAAAAATAATGTGCGGAGTATGGTGGACTTCGCCATGGCTTTGATGGGAAGACTGGAAAACATCAATAGACACTCTTTCAACAACTTCAAACTCAGGATAGGAATAAACCATGGCCCTGTCATTGCTGGAGTAATTGGAGCTCATAAACCTCAGTACGACATCTGGGGCAATGCTGTGAATGTAGCCAGCAGAATGGACAGCACTGGtgtactaaataaaatacagGTGACTGAAGAAACTGCGCAGGTAGCTGAGAGCATGGGCTTTGTCGTGACCAAGAGAGGCATCATTAACGTGAAAGGCAAAGGACAGCTTACTACTTACTTCATCAACACTGAGCCATCATCACAATACCCATAGTTCATAAAAagaatacagtacatacactgtactgtatgtatctCTCTCAAAAACCTATCAGTGGAGTCTACCTTCCTAGTTATGATGTTGATAACATGTCTGAATCATCagtctttgtcattttttcactGTAGGAAATGAGTGATAAGTGAGACATgaatttcagacaaaaatgtACAAGATTTTGTAACAGAATCTCATActagaagaataagaagaataagCAGTTCCTGTACAGCGAATGCTGCACTTAAATGTTTACAAGCTCTGTGGCTTAGCACGTTTGCCAAATGCACTTCCCTACTATTACAGAATGTAATTTTTGCTGTATGTTTCCATTAATGcctatgtttaaaatatttatttattaaagactgtTGTATGCACTTTCCCACATACATCTACCAGTTTTCTattcataatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465609 lncRNA upstream 163291 6482538 ~ 6483100 (+) True G392682
TU465608 lncRNA upstream 164894 6480949 ~ 6481497 (+) True G392681
TU465606 lncRNA upstream 166309 6478250 ~ 6480082 (+) True G392679
TU465571 lncRNA upstream 270131 6368327 ~ 6376260 (+) True G392644
TU465532 lncRNA upstream 433051 6169964 ~ 6213340 (+) True G392610
TU466166 lncRNA downstream 49645 6720882 ~ 6745244 (+) False G393113
TU466168 lncRNA downstream 49645 6720882 ~ 6745244 (+) True G393113
TU466170 lncRNA downstream 49645 6720882 ~ 6742535 (+) False G393113
TU466172 lncRNA downstream 49645 6720882 ~ 6725255 (+) False G393113
TU466173 lncRNA downstream 49645 6720882 ~ 6742210 (+) False G393113
XM_026943168.2 mRNA upstream 2977 6636928 ~ 6643414 (+) True khnyn
XM_034301344.1 mRNA upstream 3772 6636928 ~ 6642619 (+) False khnyn
XM_026943176.2 mRNA upstream 19257 6620904 ~ 6627134 (+) True si:dkeyp-74b6.2
XM_034301080.1 mRNA upstream 27709 6614859 ~ 6618682 (+) False LOC113544406
XM_034301079.1 mRNA upstream 27709 6615959 ~ 6618682 (+) False LOC113544406
XM_026943064.2 mRNA downstream 1901 6673138 ~ 6687356 (+) True si:cabz01101003.1
XM_034301392.1 mRNA downstream 17283 6688520 ~ 6696420 (+) False emc4
XM_026942872.2 mRNA downstream 17838 6689075 ~ 6696420 (+) True emc4
XM_026943278.2 mRNA downstream 27835 6699072 ~ 6710755 (+) True lpcat4
XM_034301357.1 mRNA downstream 49608 6720845 ~ 6745254 (+) True nop10
XR_004577479.1 other upstream 27709 6615959 ~ 6618682 (+) True LOC113544406
XR_004577472.1 other downstream 225756 6896993 ~ 6900940 (+) False LOC117596330
TU466595 other downstream 756381 7427618 ~ 7430910 (+) True G393467
TU467438 other downstream 1587691 8258928 ~ 8259302 (+) True G394251
trnal-cag_18 other downstream 2024960 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 2464720 9135957 ~ 9137421 (+) False LOC113544250

Expression Profile