RNA id: XM_026943064.2


Basic Information

Item Value
RNA id XM_026943064.2
length 3299
RNA type mRNA
GC content 0.50
exon number 16
gene id si:cabz01101003.1
representative True

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 6673138 ~ 6687356 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaAACTTTCCTTGCTGCTGATTGGTGTTCTTTGCTGTCCATCATTTCGTTTCCTGTTTtcgattttttttcctcctgcgCTGAAGTACCAAAGTTTAATTCACGGCGATATCGATGTTGtgagtTAGTCGCTTTTACCATGTCGGCCGTCACGCAACAAAACAGAAGGAGACGCCCCCCTAAAATGTACATACTGACGTCCGACCACAAGGTACAAGACCACCTGGATGGTACCATTCGGCTGCAGAGGGGGAATCTGTGCCAAGAGCAGGAGGGTGGAGGGGAGCGCGGTGGAAGAGGGGACTTCTTATGGGTAAAGGTTATAGACAATGGCGCTATGGTGAAGCTTGATAAGCACTTATTAAGTGAAATAGCTGCTGATCAGGCTGGCTTGCTGGAGCCTATCACTGACCTTGAGCTGCGATTCAAACTGCTCTCCAAACCTCACCGGCTTGCCAGATTGGCCAGCTTGCCCCTGGGGTCGCCCGTGCTAGTGCGGTATGGCCAGACAGGAGAACTGGCTGATGCTGAGCTCCGTTACCGTGGCCCCTTAATGCGAGGGAGCGGCGCTGTGTATTTTGGGGTCCAACTAAAAggatCCGCAGCAGGCAGGGGCAGCAGTAATGGAAGTTACAAAGGCCACCAGCTTTTCACGTGCCCTGAACAGTGTGCCCTTTTTGTGTCAGTCAGCGATATCATACCATTTCGACCGACCCGAAGCAGCAGTTTTGGGGATAATGAACCTCaacaaactgaaataaacagaCCAAACCAGAACAACCAGAGTTCTAGTCATGTCCCAAATCCAGTTAGTGTCTTAGCACGTACAGCAGAATCAGTGCCATCTGACACTTGCTTACCTCTGCTGCAAGTGGGGCAGAGGGTCTGCTTCACCCTGGACAAGGTGCATCACTGGGGCACAGTGCAGTACTGCGGGCAGCTTCCTGGCCGTACATCGTCAGGAGGAGTGTATGTGGGAGTTTTGCTGGACAATCCAGTAGGAAACTGGAATGGTTACTATAAAAACTACAAGCTGTGCTCTATTCCTTCTCCCGAATTCGGCCACCTTCTTCCCCTCTCCAAAGTGGTTGCAGaaacaagATCAGAGCGCACAACTCCAGAAATCCCTCCACTTCCTTCTTCCAAAAACGTGCATCAGCCTTCTTCGCCCACACATAGCAGGCACCTCCCACAGACTACAATAACCACAAACCCCAGCCACAACCCTAGACTGCTGATAGAGCCTTCCATGCTAGCCATGGCTAAATCTGCTCTACAACCTACAACCTCATCAGCAGCTTCAAAAGTTGCTTTAAAACCTCCTCCTGTCCCGATCGTTAAATCCGCTGTCAGACCACCTCCTGTTCCACCTAATAAGTCacaagctccgcccctttcaCCCTCCACTGACCAACTTCATACTTCAAATGGATTTCATAATCCACCCTCTCCACTGATTGCAGAGAAAGCAGAAGCTAATATGTGGTTAGAGGTTGGTTCTATGGTCGAGGTGAATGACCCACCACTTTTCGGAGTCATTCGGTGGATTGGATACATCGGTGGAATTTCAGAACCAGTGGCTGGCATCGAACTGGACCAGGAGTTGACCGCTGCCACGGATGGCAACTACCTGGGTGAGCGTCATTTCCGTTGCCCCCCTAACAAGGGGCTGTTTATCAAACTGCGTAACTGTAGACGAGACTCCAGATTTCCTGTCCCTGAGGCACCGATCAATCAGGTGGAGCGCTGCAATTCGATTGCATTTGCAGAATGGGGCAGTAAGCGTGTGGAGGAGAACACACCACCCATGTTGGGTCAGGAGGCTCGGCAGTTGTATGAAGGCTTTAAGAAAGGCATCCAGGGCCATCTCAACTCCTGCTACCTGGATGCATCACTCTTCAGtcTGTTCTCCTGCTGCAGTTCAGTCGACTGGGTTTTGTTTTGGCCCTGCAACGAACATGGCCACCGAAGCAAAGATGCTCAGGAACTACTGCGCTGTGAAATTGTCAATCCTTTACGCAGGTTTGGATACGTATGTGCCAGTAAGACTATGGCATTGCGGAAGCTTCTGGAAGCTGAGACTACAGATGCAGGCTTTACTAATGAAGAGAAAGATCCTGAAGAATTCCTCAACAAGCTTTTCCAGCTCCTCCGGGTGGAACCACTTCTGAAGATTAGATCTTTGAGCCAGGAGCCACAGGAATGCCACATTTATCAACTTTTCCCTCCTACACTTCCCTGTCCATCTTCACCTATTCGTTCTCCGCTCTCGCCCtctttcactccctctctctctccaatcCCTCTGTCCTCACCCTCAGCTGGATTCATGAGGGTTGCCAGTGTGCAGACACTGCTGGAATCCTCCTTCATGCATTCTGGGCTTAAATTCACAGAGGCTCCATCCTGTCTTCCTCTGCTTATGCCACGCTTCGGTAAAGAGTTTAAGATGTTTGATGCCATTCTGCCATCCCTCACACTCGACATCACCGACCTTCTGGACGAGACACTTCGACAGTGTAGTATATGTCAGTCGGTGGCAGAGTGGGAGTGTTCACAGTGTTATGAGGATCTGGACATCACACCTGGCCAGTTAAAACAGTATTGCAACACCTGCAATGCCCAAGTTCACGCCCACAAGAAGCGCCAGACACACAAACCAGTTAAGGTCAGAATGCCCAAGGGCACGTGGGAGGGACCGGTTCATGGAGCTCGCCAGCAATTAACTCTCTTCGCTGTGACATGTATCGAGACCAGTCATTATGTGAGCTTCGTCAAGCACGGGCCCCTCCCTACCGACTGGCTGTTCTTCGACAGTATGGCTGATAGAGAGGGAGGGGAGAACGGCTTCAACGTGCCACAGGTGAGGGCGTGTCCAGAGGTGGGGCGCTACCTGAGCCTGTCAGAGGCAGAGCTCAGCCGCTTAGACTCCACCTTCCTGAAAGAGCCAGTCCGAAGATTGCTCTGCGATGCCTACATGTGCCTGTATCACTGTCCTGAACTGAGCCTGTATAAGTGACGTAAAGAGCTAGCAGTGATGCTTCTCCTGACACACAACCAACCTTACAGTGTTTCAAATACGACAGTGTTGCAAATCTTCTTTTGGTGTGTCACATGACGAAAGAGGACGAGCTGATTGTAGCGAACAGAATAAAACTGCAAACATAAATTGACAGTCAGAGGATTTTGAACACTATAAAGACTCTTTGGTTAAATCTCAAGCAGTGGGCTCATCTTAAATACAAAATCTAAAGGGTCGGTATAAGTGAactgagaaataaagaaacaatctTGATCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466092 lncRNA upstream 8089 6663754 ~ 6665049 (+) False G393056
TU466093 lncRNA upstream 8089 6663754 ~ 6665049 (+) False G393056
TU466091 lncRNA upstream 8216 6663754 ~ 6664922 (+) True G393056
TU465609 lncRNA upstream 190038 6482538 ~ 6483100 (+) True G392682
TU465608 lncRNA upstream 191641 6480949 ~ 6481497 (+) True G392681
TU466166 lncRNA downstream 33526 6720882 ~ 6745244 (+) False G393113
TU466168 lncRNA downstream 33526 6720882 ~ 6745244 (+) True G393113
TU466170 lncRNA downstream 33526 6720882 ~ 6742535 (+) False G393113
TU466172 lncRNA downstream 33526 6720882 ~ 6725255 (+) False G393113
TU466173 lncRNA downstream 33526 6720882 ~ 6742210 (+) False G393113
XM_026943061.2 mRNA upstream 1901 6646391 ~ 6671237 (+) True LOC113544317
XM_026943063.2 mRNA upstream 1901 6646391 ~ 6671237 (+) False LOC113544317
XM_026943062.2 mRNA upstream 1901 6647652 ~ 6671237 (+) False LOC113544317
XM_026943168.2 mRNA upstream 29724 6636928 ~ 6643414 (+) True khnyn
XM_034301344.1 mRNA upstream 30519 6636928 ~ 6642619 (+) False khnyn
XM_034301392.1 mRNA downstream 1164 6688520 ~ 6696420 (+) False emc4
XM_026942872.2 mRNA downstream 1719 6689075 ~ 6696420 (+) True emc4
XM_026943278.2 mRNA downstream 11716 6699072 ~ 6710755 (+) True lpcat4
XM_034301357.1 mRNA downstream 33489 6720845 ~ 6745254 (+) True nop10
XM_034301355.1 mRNA downstream 33489 6720845 ~ 6742131 (+) False nop10
XR_004577479.1 other upstream 54456 6615959 ~ 6618682 (+) True LOC113544406
XR_004577472.1 other downstream 209637 6896993 ~ 6900940 (+) False LOC117596330
TU466595 other downstream 740262 7427618 ~ 7430910 (+) True G393467
TU467438 other downstream 1571572 8258928 ~ 8259302 (+) True G394251
trnal-cag_18 other downstream 2008841 8696197 ~ 8696279 (+) True trnal-cag_18
XR_003404490.2 other downstream 2448601 9135957 ~ 9137421 (+) False LOC113544250

Expression Profile